putTHY – alpha-putrescinylthymine
Name | ||
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WID | putTHY |
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Name | alpha-putrescinylthymine |
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Traditional name | 5-{[(4-aminobutyl)amino]methyl}-1,3-dihydropyrimidine-2,4-dione | |
IUPAC name | 5-{[(4-aminobutyl)amino]methyl}-1,2,3,4-tetrahydropyrimidine-2,4-dione | |
Cross references | PubChem: 24523142, CAS: 40451-54-5 | |
Classification | ||
Type | modified_nucleobase |
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Structure | ||
Empirical formula (pH 7.5) | H16C9N4O2 | |
SMILES (pH 7.5) | C1(=CNC(=O)NC1=O)CNCCCCN | |
Charge (pH 7.5) | 2 | |
Is hydrophobic | False |
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Molecular weight (Da) | 212.25 |
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van der Waals volume (pH 7.5; Å3 molecule‑1) |
197.76 | |
pI | 10.03 | |
logP | -2.60 | |
logD (pH 7.5) | -6.28 | |
Function | ||
Reaction participant | DNA base amination (5-hydroxymethyluracil ==> alpha-putrescinylthymine; putrescine) [c]: hm5URA + PTRC ⇒ (2) H + H2O + putTHY |
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Comments | ||
Comments | occurs in bacteriophage DNA [PUB_0477]; in bacteriophage PhiW-14 up to 50% thymidine replaced by putdT [PUB_0478]; | |
References | ||
Metadata | ||
Created | 2012-10-01 15:07:06 | |
Last updated | 2012-10-01 15:12:30 |