m5dC – 5-methyl-2'-deoxycytidine
Name | ||
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WID | m5dC |
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Name | 5-methyl-2'-deoxycytidine |
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Traditional name | 4-amino-1-[4-hydroxy-5-(hydroxymethyl)oxolan-2-yl]-5-methylpyrimidin-2-one | |
IUPAC name | 4-amino-1-[4-hydroxy-5-(hydroxymethyl)oxolan-2-yl]-5-methyl-1,2-dihydropyrimidin-2-one | |
Cross references | PubChem: 6383, CAS: 838-07-3, KEGG: C03592 | |
Classification | ||
Type | modified_deoxyribonucleoside_methylation |
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Structure | ||
Empirical formula (pH 7.5) | H15C10N3O4 | |
SMILES (pH 7.5) | CC1=CN(C(=O)N=C1N)C2CC(C(O2)CO)O | |
Charge (pH 7.5) | 0 | |
Is hydrophobic | False |
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Molecular weight (Da) | 241.24 |
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van der Waals volume (pH 7.5; Å3 molecule‑1) |
209.35 | |
ΔfG'o (pH 7.5, 25C, I = 0; kJ mol‑1) | 307.90 | |
pI | 7.82 | |
logP | -1.50 | |
logD (pH 7.5) | -1.50 | |
Concentrations | ||
Media composition (SP4; mM) | 0.000207 |
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Function | ||
Reaction participant |
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Comments | ||
Comments | occurs in bacteriophage DNA [PUB_0477]; 100% cytidine replacement in phage XP12 [PUB_0478]; 0.3-2% cytidine replacement in bacteria [PUB_0478]; | |
References | ||
Metadata | ||
Created | 2012-10-01 15:07:02 | |
Last updated | 2012-10-01 15:12:20 |