glchm5URA – beta-D-glucosylhydroxymethyluracil; base J
Name | ||
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WID | glchm5URA |
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Name | beta-D-glucosylhydroxymethyluracil; base J |
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Traditional name | 5-({[3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}methyl)-1,3-dihydropyrimidine-2,4-dione | |
IUPAC name | 5-({[3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}methyl)-1,2,3,4-tetrahydropyrimidine-2,4-dione | |
Cross references | PubChem: 34878572 | |
Classification | ||
Type | modified_nucleobase |
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Structure | ||
Empirical formula (pH 7.5) | H16C11N2O8 | |
SMILES (pH 7.5) | N1C=C(C(=O)NC1=O)COC2C(C(C(C(O2)CO)O)O)O | |
Charge (pH 7.5) | 0 | |
Is hydrophobic | False |
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Molecular weight (Da) | 304.25 |
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van der Waals volume (pH 7.5; Å3 molecule‑1) |
249.21 | |
pI | 3.40 | |
logP | -3.51 | |
logD (pH 7.5) | -3.51 | |
Function | ||
Reaction participant | DNA base glucosyl transfer (5-hydroxymethyluracil ==> beta-D-glucosylhydroxymethyluracil; base J; glucose) [c]: GLC + hm5URA ⇒ glchm5URA + H2O |
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Comments | ||
Comments | discovered in African trypanosomes [PUB_0478] | |
References | ||
Metadata | ||
Created | 2012-10-01 15:06:59 | |
Last updated | 2012-10-01 15:12:13 |