glchm5CSN – beta-D-glucosylhydroxymethylcytosine
| Name | ||
|---|---|---|
| WID | glchm5CSN |
|
| Name | beta-D-glucosylhydroxymethylcytosine |
|
| Traditional name | 4-amino-5-({[3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}methyl)-1H-pyrimidin-2-one | |
| IUPAC name | 4-amino-5-({[3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}methyl)-1,2-dihydropyrimidin-2-one | |
| Classification | ||
| Type | modified_nucleobase |
|
| Structure | ||
| Empirical formula (pH 7.5) | H17C11N3O7 | |
| SMILES (pH 7.5) | N1C=C(C(=NC1=O)N)COC2C(C(C(C(O2)CO)O)O)O | |
| Charge (pH 7.5) | 0 | |
| Is hydrophobic | False |
|
| Molecular weight (Da) | 303.27 |
|
| van der Waals volume (pH 7.5; Å3 molecule‑1) |
252.59 | |
| pI | 10.79 | |
| logP | -3.89 | |
| logD (pH 7.5) | -3.90 | |
| Function | ||
| Reaction participant | DNA base glucosyl transfer (5'-hydroxymethylcytosine ==> beta-D-glucosylhydroxymethylcytosine; glucose) [c]: GLC + hm5CSN ⇒ glchm5CSN + H2O |
|
| Metadata | ||
| Created | 2012-10-01 15:06:59 | |
| Last updated | 2012-10-01 15:12:12 | |
