SER – L-Serine

Name
WID	SER
Name	L-Serine
Traditional name	serine
IUPAC name	2-amino-3-hydroxypropanoic acid
Cross references	ChEBI: 17115, PubChem: 3365, CAS: 56-45-1, ThreeDMET: B01145, KNApSAcK: C00001393, ... 4 more

Classification
Type	amino_acid

Structure
Empirical formula (pH 7.5)	H₇C₃N₁O₃
SMILES (pH 7.5)	C(=O)(O)C(N)CO
Charge (pH 7.5)	0
Is hydrophobic	False
Molecular weight (Da)	105.09
van der Waals volume (pH 7.5; Å³ molecule^‑1)	93.47
Δ_fG^'o (pH 7.5, 25C, I = 0; kJ mol^‑1)	-213.00
pI	5.69
logP	-4.02
logD (pH 7.5)	-4.03

Concentrations
Biomass composition (SP4 media, 5% CO₂, 37C; mmol gDCW^‑1)	0.295975 [c]

Function
Reaction participant	seryl-tRNA (MG507) aminoacylation [c]: ATP + SER ⇒ AMP + PPI Protein degradation (SER) [c]: ATP + (2) H2O + SerSer ⇒ ADP + H + PI + (2) SER tRNA U8 sulfurtransferase [c]: ATP + CYS + H2O + UMP ⇒ AMP + H + PPI + s4UMP + SER tRNA U8 sulfurtransferase [c]: ATP + CYS + H2O + UMP ⇒ AMP + H + PPI + s4UMP + SER protein serine phosphorylation [c]: ATP + SER ⇒ ADP + H + pSER ... 69 more protein serine phosphorylation [c]: ATP + SER ⇒ ADP + H + pSER Protein degradation (SER) [c]: ATP + (2) H2O + SerSer ⇒ ADP + H + PI + (2) SER protein serine phosphorylation [c]: ATP + SER ⇒ ADP + H + pSER tRNA U8 sulfurtransferase [c]: ATP + CYS + H2O + UMP ⇒ AMP + H + PPI + s4UMP + SER tRNA U8 sulfurtransferase [c]: ATP + CYS + H2O + UMP ⇒ AMP + H + PPI + s4UMP + SER tRNA U8 sulfurtransferase [c]: ATP + CYS + H2O + UMP ⇒ AMP + H + PPI + s4UMP + SER tRNA U8 sulfurtransferase [c]: ATP + CYS + H2O + UMP ⇒ AMP + H + PPI + s4UMP + SER seryl-tRNA (MG475) aminoacylation [c]: ATP + SER ⇒ AMP + PPI tRNA U8 sulfurtransferase [c]: ATP + CYS + H2O + UMP ⇒ AMP + H + PPI + s4UMP + SER tRNA U8 sulfurtransferase [c]: ATP + CYS + H2O + UMP ⇒ AMP + H + PPI + s4UMP + SER Protein polymerization (Ser) [c]: (2) SER ⇒ H2O + SerSer tRNA U8 sulfurtransferase [c]: ATP + CYS + H2O + UMP ⇒ AMP + H + PPI + s4UMP + SER tRNA U8 sulfurtransferase [c]: ATP + CYS + H2O + UMP ⇒ AMP + H + PPI + s4UMP + SER seryl-tRNA (MG487) aminoacylation [c]: ATP + SER ⇒ AMP + PPI tRNA U8 sulfurtransferase [c]: ATP + CYS + H2O + UMP ⇒ AMP + H + PPI + s4UMP + SER tRNA U8 sulfurtransferase [c]: ATP + CYS + H2O + UMP ⇒ AMP + H + PPI + s4UMP + SER protein serine phosphorylation [c]: ATP + SER ⇒ ADP + H + pSER Dipeptide import (Ser-Ser) [c]: H2O + SerSer ⇒ (2) SER tRNA U8 sulfurtransferase [c]: ATP + CYS + H2O + UMP ⇒ AMP + H + PPI + s4UMP + SER tRNA U8 sulfurtransferase [c]: ATP + CYS + H2O + UMP ⇒ AMP + H + PPI + s4UMP + SER tRNA U8 sulfurtransferase [c]: ATP + CYS + H2O + UMP ⇒ AMP + H + PPI + s4UMP + SER tRNA U8 sulfurtransferase [c]: ATP + CYS + H2O + UMP ⇒ AMP + H + PPI + s4UMP + SER protein serine phosphorylation [c]: ATP + SER ⇒ ADP + H + pSER protein serine phosphorylation [c]: ATP + SER ⇒ ADP + H + pSER protein serine phosphorylation [c]: ATP + SER ⇒ ADP + H + pSER tRNA U8 sulfurtransferase [c]: ATP + CYS + H2O + UMP ⇒ AMP + H + PPI + s4UMP + SER protein serine phosphorylation [c]: ATP + SER ⇒ ADP + H + pSER tRNA U8 sulfurtransferase [c]: ATP + CYS + H2O + UMP ⇒ AMP + H + PPI + s4UMP + SER tRNA U34 sulfurtransferase [c]: ATP + CYS + H2O + UMP ⇒ AMP + H + PPI + s2UMP + SER protein serine phosphorylation [c]: ATP + SER ⇒ ADP + H + pSER tRNA U34 sulfurtransferase [c]: ATP + CYS + H2O + UMP ⇒ AMP + H + PPI + s2UMP + SER protein serine phosphorylation [c]: ATP + SER ⇒ ADP + H + pSER tRNA U8 sulfurtransferase [c]: ATP + CYS + H2O + UMP ⇒ AMP + H + PPI + s4UMP + SER tRNA U8 sulfurtransferase [c]: ATP + CYS + H2O + UMP ⇒ AMP + H + PPI + s4UMP + SER tRNA U8 sulfurtransferase [c]: ATP + CYS + H2O + UMP ⇒ AMP + H + PPI + s4UMP + SER tRNA U8 sulfurtransferase [c]: ATP + CYS + H2O + UMP ⇒ AMP + H + PPI + s4UMP + SER tRNA U8 sulfurtransferase [c]: ATP + CYS + H2O + UMP ⇒ AMP + H + PPI + s4UMP + SER tRNA U8 sulfurtransferase [c]: ATP + CYS + H2O + UMP ⇒ AMP + H + PPI + s4UMP + SER tRNA U8 sulfurtransferase [c]: ATP + CYS + H2O + UMP ⇒ AMP + H + PPI + s4UMP + SER tRNA U8 sulfurtransferase [c]: ATP + CYS + H2O + UMP ⇒ AMP + H + PPI + s4UMP + SER protein serine phosphorylation [c]: ATP + SER ⇒ ADP + H + pSER tRNA U8 sulfurtransferase [c]: ATP + CYS + H2O + UMP ⇒ AMP + H + PPI + s4UMP + SER protein serine phosphorylation [c]: ATP + SER ⇒ ADP + H + pSER tRNA U8 sulfurtransferase [c]: ATP + CYS + H2O + UMP ⇒ AMP + H + PPI + s4UMP + SER phosphoserine phosphatase [c]: H2O + pSER ⇒ PI + SER Glycerophosphodiester phosphodiesterase (Glycerophosphoserine) [c]: GPS + H2O ⇒ GL3P + SER protein serine phosphorylation [c]: ATP + SER ⇒ ADP + H + pSER tRNA U8 sulfurtransferase [c]: ATP + CYS + H2O + UMP ⇒ AMP + H + PPI + s4UMP + SER protein serine phosphorylation [c]: ATP + SER ⇒ ADP + H + pSER seryl-tRNA (MG506) aminoacylation [c]: ATP + SER ⇒ AMP + PPI Glycerophosphodiester phosphodiesterase (Glycerophosphoserine) [c]: GPS + H2O ⇒ GL3P + SER tRNA U8 sulfurtransferase [c]: ATP + CYS + H2O + UMP ⇒ AMP + H + PPI + s4UMP + SER protein serine phosphorylation [c]: ATP + SER ⇒ ADP + H + pSER protein serine phosphorylation [c]: ATP + SER ⇒ ADP + H + pSER protein serine phosphorylation [c]: ATP + SER ⇒ ADP + H + pSER tRNA U8 sulfurtransferase [c]: ATP + CYS + H2O + UMP ⇒ AMP + H + PPI + s4UMP + SER tRNA U8 sulfurtransferase [c]: ATP + CYS + H2O + UMP ⇒ AMP + H + PPI + s4UMP + SER protein serine phosphorylation [c]: ATP + SER ⇒ ADP + H + pSER glycine hydroxymethyltransferase, reversible [c]: (2) H + SER + THF ⇒ GLY + H2O + METTHF tRNA U8 sulfurtransferase [c]: ATP + CYS + H2O + UMP ⇒ AMP + H + PPI + s4UMP + SER Peptidyl-tRNA hydrolysis (SER) [c]: AMP_SER + H2O ⇒ AMP + SER protein serine phosphorylation [c]: ATP + SER ⇒ ADP + H + pSER protein serine phosphorylation [c]: ATP + SER ⇒ ADP + H + pSER tRNA U34 sulfurtransferase [c]: ATP + CYS + H2O + UMP ⇒ AMP + H + PPI + s2UMP + SER protein serine phosphorylation [c]: ATP + SER ⇒ ADP + H + pSER tRNA U8 sulfurtransferase [c]: ATP + CYS + H2O + UMP ⇒ AMP + H + PPI + s4UMP + SER protein serine phosphorylation [c]: ATP + SER ⇒ ADP + H + pSER tRNA U8 sulfurtransferase [c]: ATP + CYS + H2O + UMP ⇒ AMP + H + PPI + s4UMP + SER tRNA U8 sulfurtransferase [c]: ATP + CYS + H2O + UMP ⇒ AMP + H + PPI + s4UMP + SER

Metadata
Created	2012-10-01 15:07:07
Last updated	2012-10-01 15:12:31