Note_ProteinPhysicalProperties – ProteinPhysicalProperties

WID Note_ProteinPhysicalProperties
Name ProteinPhysicalProperties
Comments Protein physical properties were compiled from several sources: BioCyc [PUB_0006] – prosthetic groups, complex composition BRENDA [PUB_0570] – pI, prosthetic groups ExPASyProtParam [PUB_0585] – half Life (using N-end rule [PUB_0586]), instability, stability, aliphatic, GRAVY, extinction coeffcient, absorption, chemical formula, molecular weight, pI Metal MaCiE [PUB_0387] – metal prosthetic groups Phobius [PUB_0262] – topology UniProt [PUB_0096] – domains See also: Note_DisulfideBonds – disulfide bonds Note_MacromolecularComplexes – macromolecular complex composition Note_Cofactors – prosthetic groups and coenzymes Note_ProteinLocalization_SignalPeptides – protein localization, signal sequences, and topology Note_ProteinNTerminalMethionineCleavage – N-terminal methionine cleavage Note_ProteinModifications – stable covalent modifications Note_ReactionCatalysis – optimal temperature, optimal pH, KD, Ki, activators, inhibitors
  1. Andreini C, Bertini I, Cavallaro G, Holliday GL, Thornton JM. Metal-MACiE: a database of metals involved in biological catalysis. Bioinformatics 25, 2088-9 (2009). WholeCell: PUB_0387, PubMed: 19369503, URL:

  2. Chang A, Scheer M, Grote A, Schomburg I, Schomburg D. BRENDA, AMENDA and FRENDA the enzyme information system: new content and tools in 2009. Nucleic Acids Res 37, D588-92 (2009). WholeCell: PUB_0570, PubMed: 18984617

  3. Keseler IM, Bonavides-Martínez C, Collado-Vides J, Gama-Castro S, Gunsalus RP, Johnson DA, Krummenacker M, Nolan LM, Paley S, Paulsen IT, Peralta-Gil M, Santos-Zavaleta A, Shearer AG, Karp PD. EcoCyc: a comprehensive view of Escherichia coli biology. Nucleic Acids Res 37, D464-70 (2009). WholeCell: PUB_0006, PubMed: 18974181

  4. Käll L, Krogh A, Sonnhammer EL. A combined transmembrane topology and signal peptide prediction method. J Mol Biol 338, 1027-36 (2004). WholeCell: PUB_0262, PubMed: 15111065, URL:

  5. Tobias JW, Shrader TE, Rocap G, Varshavsky A. The N-end rule in bacteria. Science 254, 1374-7 (1991). WholeCell: PUB_0586, PubMed: 1962196

  6. ... 2 more

  7. UniProt Consortium. The Universal Protein Resource (UniProt) 2009. Nucleic Acids Res 37, D169-74 (2009). WholeCell: PUB_0096, PubMed: 18836194, URL:

  8. Wilkins MR, Gasteiger E, Bairoch A, Sanchez JC, Williams KL, Appel RD, Hochstrasser DF. Protein identification and analysis tools in the ExPASy server. Methods Mol Biol 112, 531-52 (1999). WholeCell: PUB_0585, PubMed: 10027275, URL:

Created 2012-10-01 15:07:34
Last updated 2012-10-01 15:13:58