MGrrnA16S – 16S ribosomal rRNA
Name | ||
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WID | MGrrnA16S |
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Name | 16S ribosomal rRNA |
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Symbol | rrsA | |
Cross references | CMR: MGrrnA16S, BioCyc: MGrrnA16S | |
Classification | ||
Type | rRNA |
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Structure | ||
Structure |
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Sequence | Chromosome: Mgenitalium_Chr_1, Coordinate: 170007 (nt), Length: 1519 (nt), Direction: Forward, G/C content: 45.6%, Sequence: 1 51 101 151 201 251 301 351 401 451 501 551 601 651 701 751 801 851 901 951 1001 1051 1101 1151 1201 1251 1301 1351 1401 1451 1501 CAATTTTTTCTGAGAGTTTGATCCTGGCTCAGGATTAACGCTGGCGGCAT GCCTAATACATGCAAGTCGATCGGAAGTAGCAATACTTTAGAGGCGAACG GGTGAGTAACACGTATCCAATCTACCTTATAATGGGGGATAACTAGTTGA AAAACTAGCTAATACCGCATAAGAACTTTAGTTCGCATGAATTAAAGTTG AAAGGACCTGCAAGGGTTCGTTATTTGATGAGGGTGCGCCATATCAGCTA GTTGGTAGGGTAATGGCCTACCAAGGCAATGACGTGTAGCTATGCTGAGA AGTAGAATAGCCACAATGGGACTGAGACACGGCCCATACTCCTACGGGAG GCAGCAGTAGGGAATTTTTCACAATGAGCGAAAGCTTGATGGAGCAATGC CGCGTGAACGATGAAGGTCTTTTTGATTGTAAAGTTCTTTTATTTGGGAA GAATGACTCTAGCAGGCAATGGCTGGAGTTTGACTGTACCACTTTGAATA AGTGACGACTAACTATGTGCCAGCAGTCGCGGTAATACATAGGTCGCAAG CGTTATCCGGATTTATTGGGCGTAAAGCAAGCGCAGGCGGATTGAAAAGT CTGGTGTTAAAGGCAGCTGCTTAACAGTTGTATGCATTGGAAACTATCAG TCTAGAGTGTGGTAGGGAGTTTTGGAATTTCATGTGGAGCGGTGAAATGC GTAGATATATGAAGGAACACCAGTGGCGAAGGCGAAAACTTAGGCCATTA CTGACGCTTAGGCTTGAAAGTGTGGGGAGCAAATAGGATTAGATACCCTA GTAGTCCACACCGTAAACGATAGATACTAGCTGTCGGAGCGATCCCTTCG GTAGTGAAGTTAACACATTAAGTATCTCGCCTGGGTAGTACATTCGCAAG AATGAAACTCAAACGGAATTGACGGGGACCCGCACAAGTGGTGGAGCATG TTGCTTAATTCGACGGTACACGAAAAACCTTACCTAGACTTGACATCCTT GGCAAAGTTATGGAAACATAATGGAGGTTAACCGAGTGACAGGTGGTGCA TGGTTGTCGTCAGCTCGTGTCGTGAGATGTTGGGTTAAGTCCCGCAACGA GCGCAACCCTTATCGTTAGTTACATTGTTTAACGAGACTGCTAATGTAAA TTGGAGGAAGGAAGGGATGACGTCAAATCATCATGCCCCTTATGTCTAGG GCTGCAAACGTGCTACAATGGCCAATACAAACAGTAGCCAACTTGTAAAA GTGAGCAAATCTGAAAAGTTGGTCTCAGTTCGGATTGAGGGCTGCAATTC GTCCTCATGAAGCTGGAATCACTAGTAATCGCGAATCAGCTATGTCGCGG TGAATACGTTCTCGGGTCTTGTACACACCGCCCGTCAAACTATGAAAGCT GGTAATATTTAAAAACGTGTTGCTAACCTTTATTGGAAGCGCATGTCAAG GATAGCACCGGTGATTGGAGTTAAGTCGTAACAAGGTACCCCTACGAGAA CGTGGGGGTGGATCACCTC 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 850 900 950 1000 1050 1100 1150 1200 1250 1300 1350 1400 1450 1500 1519 |
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Transcription unit | TU_088 |
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Empirical formula (pH 7.5) | H16326C14806N6443O10576P1519 | |
Molecular weight (pH 7.5; Da) | 500789.42 |
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Functional genomics | ||
Is essential | Yes (Show evidence) |
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Relative expression | 2920.72 (dimensionless) (Show evidence) |
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Half life | 1200.0 (min) (Show evidence) |
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Extinction coefficient (260 nm, 25C, pH 7.0) |
15378900 | |
pI | 3.83 | |
Function | ||
Complex subunit | 30S ribosomal subunit [c]: MGrrnA16S + MG_070_MONOMER + MG_087_MONOMER + MG_088_MONOMER + MG_090_MONOMER + MG_092_MONOMER + MG_150_MONOMER + MG_155_MONOMER + MG_157_MONOMER + MG_160_MONOMER + MG_164_MONOMER + MG_165_MONOMER + MG_168_MONOMER + MG_175_MONOMER + MG_176_MONOMER + MG_311_MONOMER + MG_417_MONOMER + MG_424_MONOMER + MG_446_MONOMER + MG_481_MONOMER + MG_522_MONOMER ⇒ RIBOSOME_30S |
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Comments | ||
Comments | Modifications were first compiled for E. coli [PUB_0105, PUB_0119, PUB_0120], and then modifications generated by homologous enzymes were mapped onto M. genitalium by sequence alignment. Modification reaction kinetics were compiled from the primary literature (see Note_RNAModification). | |
References |
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Metadata | ||
Created | 2012-10-01 15:07:34 | |
Last updated | 2012-10-01 15:13:57 |