MG_402 – ATP synthase F1, delta subunit

Name
WID	MG_402
Name	ATP synthase F1, delta subunit
Symbol	atpH
Protein product	MG_402_MONOMER
Cross references	GenBank: AAC71630.1, CMR: MG_402, BioCyc: MG_402, SwissProt: P47642
Homologs	E. coli: b3735 M. hyopneumoniae: mhp052 M. mobile: mhp052 M. pneumoniae: MPN_601

Classification
Type	mRNA

Structure
Structure
Sequence	Chromosome: Mgenitalium_Chr_1, Coordinate: 506671 (nt), Length: 531 (nt), Direction: Reverse, G/C content: 25.4%, Sequence: 1 51 101 151 201 251 301 351 401 451 501 ATGATTAATGCACAAGCATTTGGAACTGCACTTTTTCAATTAAGTGAAGA GCAAAAACAAGTAAAGAAAATTTATGAAGAGTGCCATTTTTTTCTGAAAT TAATGCGTAATTTTAAAGATGGTTCATTATCGTTCTTACTTAATTCTTAT ACACTAACAAAACCAGATAAAATAAGACTTGTTGATAAGTTGTTTAAAAA TCATTTTTGTCAAGTTTTTGTTGATTTTTTAAAAGTAATTATTTTAAAGG GTTACTTTACTTTAGTTGAACAGGCAATTAAGTATTTTTTTGATAATGTT GAAAGTCAAAAACACATTCAATTTATCAAAATAATTACTGCTTTTGAATT AAGCTCAAAACAACTTAACAAAATTATTGCAATAATGGAAAAACGTTTTA AAACAAAGGTTGTTTATAAAACTGAGATTGATCGCAGTTTAATTTCAGGA ATTAGGATAGAATCAAGTTCCCATTTATTTGAAAAAAATGTGCGTGATGA ATTAAAACGCATAATGGCCCATTTTATTTAA 50 100 150 200 250 300 350 400 450 500 531
Transcription unit	TU_292
Empirical formula (pH 7.5)	H₅₆₅₀C₅₁₁₈N₂₀₇₉O₃₇₀₆P₅₃₁
Molecular weight (pH 7.5; Da)	172026.19

Functional genomics
Is essential	Yes (Show evidence) Value: True Measured: Yes Species: Mycoplasma genitalium G37, Media: SP4 + 5% CO2, Temperature (C): 37.0 References Glass JI, Assad-Garcia N, Alperovich N, Yooseph S, Lewis MR, Maruf M, Hutchison CA 3rd, Smith HO, Venter JC. Essential genes of a minimal bacterium. Proc Natl Acad Sci U S A 103, 425-30 (2006). WholeCell: PUB_0193, PubMed: 16407165
Relative expression	1.96428 (dimensionless) (Show evidence) Value: 1.96428 Measured: Yes Species: Mycoplasma pneumoniae M129, Media: Hayflick media + 20% horse serum, Temperature (C): 37.0 References Weiner J 3rd, Zimmerman CU, Göhlmann HW, Herrmann R. Transcription profiles of the bacterium Mycoplasma pneumoniae grown at different temperatures. Nucleic Acids Res 31, 6306-20 (2003). WholeCell: PUB_0569, PubMed: 14576319
Half life	5.2 (min) (Show evidence) Value: 5.2 Measured: Yes Species: Escherichia coli NCM3416, Media: M9 media + 0.2% glucose, OD600 = 0.8, Temperature (C): 30.0 References Bernstein JA, Khodursky AB, Lin PH, Lin-Chao S, Cohen SN. Global analysis of mRNA decay and abundance in Escherichia coli at single-gene resolution using two-color fluorescent DNA microarrays. Proc Natl Acad Sci U S A 99, 9697-702 (2002). WholeCell: PUB_0602, PubMed: 12119387
Extinction coefficient (260 nm, 25C, pH 7.0)	5565400
pI	4.13

Comments
References	Bernstein JA, Khodursky AB, Lin PH, Lin-Chao S, Cohen SN. Global analysis of mRNA decay and abundance in Escherichia coli at single-gene resolution using two-color fluorescent DNA microarrays. Proc Natl Acad Sci U S A 99, 9697-702 (2002). WholeCell: PUB_0602, PubMed: 12119387 Glass JI, Assad-Garcia N, Alperovich N, Yooseph S, Lewis MR, Maruf M, Hutchison CA 3rd, Smith HO, Venter JC. Essential genes of a minimal bacterium. Proc Natl Acad Sci U S A 103, 425-30 (2006). WholeCell: PUB_0193, PubMed: 16407165 Weiner J 3rd, Zimmerman CU, Göhlmann HW, Herrmann R. Transcription profiles of the bacterium Mycoplasma pneumoniae grown at different temperatures. Nucleic Acids Res 31, 6306-20 (2003). WholeCell: PUB_0569, PubMed: 14576319

Metadata
Created	2012-10-01 15:07:28
Last updated	2012-10-01 15:13:38