MG_396 – ribose 5-phosphate isomerase B

Name
WID	MG_396
Name	ribose 5-phosphate isomerase B
Symbol	rpiB
Protein product	MG_396_MONOMER
Cross references	GenBank: AAC71624.1, CMR: MG_396, BioCyc: MG_396, SwissProt: P47636
Homologs	E. coli: b4090 B. subtilis: BSU36920 M. pneumoniae: MPN_595 S. coelicolor: SCO2627

Classification
Type	mRNA

Structure
Structure
Sequence	Chromosome: Mgenitalium_Chr_1, Coordinate: 500261 (nt), Length: 459 (nt), Direction: Reverse, G/C content: 33.3%, Sequence: 1 51 101 151 201 251 301 351 401 451 ATGAGTTTTAATATCTTTATTGCTTCTGATCATACCGGTTTAACTCTTAA AAAAATTATTAGTGAACACCTAAAGACTAAGCAGTTTAATGTAGTTGATC TTGGCCCTAATTATTTTGATGCTAATGATGATTATCCTGACTTTGCTTTT TTGGTAGCTGATAAGGTCAAGAAAAATTCTGATAAAGATCTTGGGATACT AATTTGCGGTACTGGTGTTGGGGTTTGTATGGCAGCAAATAAAGTAAAAG GAGTATTAGCGGCTTTGGTTGTTAGTGAGAAAACAGCAGCTTTAGCTAGA CAACATGATAATGCCAATGTTTTATGTCTTTCCAGTCGTTTTGTAACTGA CAGTGAAAACATTAAAATAGTGGATGATTTTCTCAAAGCTAATTTTGAAG GTGGTAGACACCAAAGACGGATAGATAAGATTATTCGATATGAAAAAGAA ACTGAATAG 50 100 150 200 250 300 350 400 450 459
Transcription unit	TU_288
Empirical formula (pH 7.5)	H₄₈₉₅C₄₄₃₅N₁₈₃₀O₃₂₁₈P₄₅₉
Molecular weight (pH 7.5; Da)	149536.43

Functional genomics
Is essential	Yes (Show evidence) Value: True Measured: Yes Species: Mycoplasma genitalium G37, Media: SP4 + 5% CO2, Temperature (C): 37.0 References Glass JI, Assad-Garcia N, Alperovich N, Yooseph S, Lewis MR, Maruf M, Hutchison CA 3rd, Smith HO, Venter JC. Essential genes of a minimal bacterium. Proc Natl Acad Sci U S A 103, 425-30 (2006). WholeCell: PUB_0193, PubMed: 16407165
Relative expression	1.96428 (dimensionless) (Show evidence) Value: 1.96428 Measured: Yes Species: Mycoplasma pneumoniae M129, Media: Hayflick media + 20% horse serum, Temperature (C): 37.0 References Weiner J 3rd, Zimmerman CU, Göhlmann HW, Herrmann R. Transcription profiles of the bacterium Mycoplasma pneumoniae grown at different temperatures. Nucleic Acids Res 31, 6306-20 (2003). WholeCell: PUB_0569, PubMed: 14576319
Half life	10.2 (min) (Show evidence) Value: 10.2 Measured: Yes Species: Escherichia coli NCM3416, Media: M9 media + 0.2% glucose, OD600 = 0.8, Temperature (C): 30.0 References Bernstein JA, Khodursky AB, Lin PH, Lin-Chao S, Cohen SN. Global analysis of mRNA decay and abundance in Escherichia coli at single-gene resolution using two-color fluorescent DNA microarrays. Proc Natl Acad Sci U S A 99, 9697-702 (2002). WholeCell: PUB_0602, PubMed: 12119387
Extinction coefficient (260 nm, 25C, pH 7.0)	4743900
pI	4.21

Comments
References	Bernstein JA, Khodursky AB, Lin PH, Lin-Chao S, Cohen SN. Global analysis of mRNA decay and abundance in Escherichia coli at single-gene resolution using two-color fluorescent DNA microarrays. Proc Natl Acad Sci U S A 99, 9697-702 (2002). WholeCell: PUB_0602, PubMed: 12119387 Glass JI, Assad-Garcia N, Alperovich N, Yooseph S, Lewis MR, Maruf M, Hutchison CA 3rd, Smith HO, Venter JC. Essential genes of a minimal bacterium. Proc Natl Acad Sci U S A 103, 425-30 (2006). WholeCell: PUB_0193, PubMed: 16407165 Weiner J 3rd, Zimmerman CU, Göhlmann HW, Herrmann R. Transcription profiles of the bacterium Mycoplasma pneumoniae grown at different temperatures. Nucleic Acids Res 31, 6306-20 (2003). WholeCell: PUB_0569, PubMed: 14576319

Metadata
Created	2012-10-01 15:07:27
Last updated	2012-10-01 15:13:37