MG_394 – serine hydroxymethyltransferase

Name
WID	MG_394
Name	serine hydroxymethyltransferase
Symbol	glyA
Protein product	MG_394_MONOMER
Cross references	GenBank: AAC71622.1, CMR: MG_394, BioCyc: MG_394, SwissProt: P47634
Homologs	E. coli: b2551 B. subtilis: BSU36900 M. hyopneumoniae: mhp154 M. mobile: mhp154 M. pneumoniae: MPN_576 S. oneidensis: SO_3471

Classification
Type	mRNA

Structure
Structure
Sequence	Chromosome: Mgenitalium_Chr_1, Coordinate: 497086 (nt), Length: 1221 (nt), Direction: Reverse, G/C content: 34.0%, Sequence: 1 51 101 151 201 251 301 351 401 451 501 551 601 651 701 751 801 851 901 951 1001 1051 1101 1151 1201 ATGTTTTCAAAGGTAAGACTTTTACTTAATAAAGAGTTACAACGTCAAAG AGAAAACATTTGTTTAATTGCTTCAGAAAATTACGTTAGCCAAGACATAT TAGCTGTAACTGGTTCAGTATTAACAAATAAATATGCAGAAGGCTATCCC AGTAAACGTTTTTATCAAGGCTGTGAAGTTGTTGATGAATCTGAAAACTT AGCCATTGAAAGTTGCAAAACTTTATTTGGAGCACAATGGGCTAATGTCC AACCTCATTCTGGATCATCTGCTAACTATGCAGTTTACTTAGCATTGTTA AAACCAGGAGATACTATCTTAGGATTAGATCTTAATTGTGGTGGTCATTT AACCCATGGTAGCCCCGTTAATTTTTCAGGTAAGCAATATCAAGCAGTAA CTTATTCGTTAGATTTTGAAACAGAAACTCTTGATTATGATGCAATTCTT CAAATTGCTCTCGAACACAAACCAAAGTTAATTATTTGTGGTTTTTCTAA CTATTCTAGGACTGTTGACTTTAAAAAATTTAGTGCAATTGCAAAACAAG TTAATGCGTATCTTTTAGCTGATATTGCCCATATTGCTGGTTTCATCGCT GCAGGTTTGCACCAAAACCCTTTGCCTTTTGTGGATGTTGTCACTTCAAC AACTCATAAAACTTTGCGTGGTCCTAGGGGGGGTATCATTATGTCTAACA ACCAAGCAATTATCAAAAAGCTTGATAGTGGAGTATTTCCTGGATGTCAG GGTGGACCTTTACAACATGTGATAGCAGCTAAATATGTTTGTTTTAAAGA AGCTTTGAATCCAAAGTTTAAGCAGTATATGCAACAAGTTAAAGATAATG CTTTAGCAATGGCAAATTGATTTTTAAAGCAGGGTTATCGTGTTGTGTCA AAAGGTACTGAAACCCACTTATTTTCATTAGTGGTTGGTAATGGTAAAGA TGTTGCGTTGTGGTTACAAAAAGCTAACATTGTTTTGAATATGAATACAA TCCCTTTTGAAACAAAATCTGCTTTTAGTCCTTCAGGTATTAGACTTGGA ACTCCTGCAATGACAACCAGAGGTTTTAAAACTAATGACTTTATTTTTGT TGCCAGTTTGATTGATAAGGTTATTAAAAGTAATGGTAATCAAAAGGTAA TTAGTCAAACAAAAACAGCTGTTTTAAATCTCTTAAAACGCTTTCCGCTC TATAAGGGTTTAGCTTATTAA 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 850 900 950 1000 1050 1100 1150 1200 1221
Transcription unit	TU_286
Empirical formula (pH 7.5)	H₁₃₀₁₉C₁₁₇₉₇N₄₈₆₆O₈₅₆₈P₁₂₂₁
Molecular weight (pH 7.5; Da)	397870.55

Functional genomics
Is essential	Yes (Show evidence) Value: True Measured: Yes Species: Mycoplasma genitalium G37, Media: SP4 + 5% CO2, Temperature (C): 37.0 References Glass JI, Assad-Garcia N, Alperovich N, Yooseph S, Lewis MR, Maruf M, Hutchison CA 3rd, Smith HO, Venter JC. Essential genes of a minimal bacterium. Proc Natl Acad Sci U S A 103, 425-30 (2006). WholeCell: PUB_0193, PubMed: 16407165
Relative expression	1.29325 (dimensionless) (Show evidence) Value: 1.29325 Measured: Yes Species: Mycoplasma pneumoniae M129, Media: Hayflick media + 20% horse serum, Temperature (C): 37.0 References Weiner J 3rd, Zimmerman CU, Göhlmann HW, Herrmann R. Transcription profiles of the bacterium Mycoplasma pneumoniae grown at different temperatures. Nucleic Acids Res 31, 6306-20 (2003). WholeCell: PUB_0569, PubMed: 14576319
Half life	2.6 (min) (Show evidence) Value: 2.6 Measured: Yes Species: Escherichia coli NCM3416, Media: M9 media + 0.2% glucose, OD600 = 0.8, Temperature (C): 30.0 References Bernstein JA, Khodursky AB, Lin PH, Lin-Chao S, Cohen SN. Global analysis of mRNA decay and abundance in Escherichia coli at single-gene resolution using two-color fluorescent DNA microarrays. Proc Natl Acad Sci U S A 99, 9697-702 (2002). WholeCell: PUB_0602, PubMed: 12119387
Extinction coefficient (260 nm, 25C, pH 7.0)	12489300
pI	4.16

Comments
References	Bernstein JA, Khodursky AB, Lin PH, Lin-Chao S, Cohen SN. Global analysis of mRNA decay and abundance in Escherichia coli at single-gene resolution using two-color fluorescent DNA microarrays. Proc Natl Acad Sci U S A 99, 9697-702 (2002). WholeCell: PUB_0602, PubMed: 12119387 Glass JI, Assad-Garcia N, Alperovich N, Yooseph S, Lewis MR, Maruf M, Hutchison CA 3rd, Smith HO, Venter JC. Essential genes of a minimal bacterium. Proc Natl Acad Sci U S A 103, 425-30 (2006). WholeCell: PUB_0193, PubMed: 16407165 Weiner J 3rd, Zimmerman CU, Göhlmann HW, Herrmann R. Transcription profiles of the bacterium Mycoplasma pneumoniae grown at different temperatures. Nucleic Acids Res 31, 6306-20 (2003). WholeCell: PUB_0569, PubMed: 14576319

Metadata
Created	2012-10-01 15:07:27
Last updated	2012-10-01 15:13:37