GLY – glycine

Name
WID	GLY
Name	glycine
Traditional name	glycine
IUPAC name	2-aminoacetic acid
Cross references	ChEBI: 15428, PubChem: 3339, CAS: 56-40-6, ThreeDMET: B01136, KNApSAcK: C00001361, ... 4 more

Classification
Type	amino_acid

Structure
Empirical formula (pH 7.5)	H₅C₂N₁O₂
SMILES (pH 7.5)	C(=O)(O)CN
Charge (pH 7.5)	0
Is hydrophobic	False
Molecular weight (Da)	75.07
van der Waals volume (pH 7.5; Å³ molecule^‑1)	67.85
Δ_fG^'o (pH 7.5, 25C, I = 0; kJ mol^‑1)	-153.10
pI	5.78
logP	-3.55
logD (pH 7.5)	-3.55

Concentrations
Biomass composition (SP4 media, 5% CO₂, 37C; mmol gDCW^‑1)	0.40652 [c]

Function
Reaction participant	Protein degradation (GLY) [c]: ATP + GlyGly + (2) H2O ⇒ ADP + (2) GLY + H + PI tRNA uridine 5-carboxymethylaminomethyl modification enzyme [c]: FTHF5 + GLY + s2UMP ⇒ cmnm5s2UMP + H2O + THF Threonine aldolase [c]: THR ⇒ ACAL + GLY tRNA uridine 5-carboxymethylaminomethyl modification enzyme [c]: FTHF5 + GLY + s2UMP ⇒ cmnm5s2UMP + H2O + THF glycine hydroxymethyltransferase, reversible [c]: (2) H + SER + THF ⇒ GLY + H2O + METTHF ... 7 more tRNA uridine 5-carboxymethylaminomethyl modification enzyme [c]: FTHF5 + GLY + s2UMP ⇒ cmnm5s2UMP + H2O + THF glycyl-tRNA (MG493) aminoacylation [c]: ATP + GLY ⇒ AMP + PPI Peptidyl-tRNA hydrolysis (GLY) [c]: AMP_GLY + H2O ⇒ AMP + GLY glycyl-tRNA (MG499) aminoacylation [c]: ATP + GLY ⇒ AMP + PPI Protein degradation (GLY) [c]: ATP + GlyGly + (2) H2O ⇒ ADP + (2) GLY + H + PI Dipeptide import (Gly-Gly) [c]: GlyGly + H2O ⇒ (2) GLY Protein polymerization (Gly) [c]: (2) GLY ⇒ GlyGly + H2O

Metadata
Created	2012-10-01 15:06:59
Last updated	2012-10-01 15:12:13