GDP – GDP

Name
WID	GDP
Name	GDP
Traditional name	[5-(2-amino-6-oxo-1H-purin-9-yl)-3,4-dihydroxyoxolan-2-yl]methyl (phosphonatooxy)phosphonate
IUPAC name	[5-(2-amino-6-oxo-6,9-dihydro-1H-purin-9-yl)-3,4-dihydroxyoxolan-2-yl]methyl (phosphonatooxy)phosphonate
Cross references	CAS: 146-91-8, ChEBI: 17552, PubChem: 3337, ThreeDMET: B01135, KEGG: C00035, ... 3 morePDBCCD: GDP, BioCyc: GDP, BiGG: gdp

Classification
Type	ribonucleotide_diphosphate

Structure
Empirical formula (pH 7.5)	H₁₂C₁₀N₅O₁₁P₂
SMILES (pH 7.5)	C(OP(=O)([O-])OP(=O)([O-])[O-])C1(OC(C(O)C(O)1)N3(C=NC2(C(=O)NC(N)=NC=23)))
Charge (pH 7.5)	-3
Is hydrophobic	False
Molecular weight (Da)	440.18
van der Waals volume (pH 7.5; Å³ molecule^‑1)	306.23
Δ_fG^'o (pH 7.5, 25C, I = 0; kJ mol^‑1)	-1573.30
pI	1.50
logP	-3.83
logD (pH 7.5)	-8.20

Function
Complex subunit	cell division protein ftsZ hydrolysed [c]: GDP + MG_224_MONOMER ⇒ MG_224_MONOMER_GDP
Reaction participant	RNA cleavage (GMP) [c]: GpGp + GTP + (2) H2O ⇒ GDP + (2) GMP + (2) H + PI Protein translocation (SRP) [c]: GTP + H2O ⇒ GDP + H + PI RNA cleavage (CMP) [c]: CpCp + GTP + (2) H2O ⇒ (2) CMP + GDP + (2) H + PI GDP diphosphokinase [c]: ATP + GDP ⇒ AMP + H + PPGPP Chromosome segregation (Obg) [c]: GTP + H2O ⇒ GDP + H + PI ... 20 more cytidine kinase (GTP) [c]: CYTD + GTP ⇒ CMP + GDP + H ribonucleoside-diphosphate reductase (GDP) [c]: (2) GDP + MG_229_231_TETRAMER + O2 ⇒ (2) DGDP + (2) H2O + MG_229_231_TETRAMER_ox guanylate kinase (GMP:dATP) [c]: DATP + GMP ⇔ DADP + GDP RNA cleavage (AMP) [c]: ApAp + GTP + (2) H2O ⇒ (2) AMP + GDP + (2) H + PI Chromosome segregation (CobQ) [c]: GTP + H2O ⇒ GDP + H + PI Ribosome assembly (Era) [c]: GTP + H2O ⇒ GDP + H + PI Ribosome assembly (RbfA) [c]: GTP + H2O ⇒ GDP + H + PI Chromosome segregation (MraZ) [c]: GTP + H2O ⇒ GDP + H + PI RNA cleavage (UMP) [c]: GTP + (2) H2O + UpUp ⇒ GDP + (2) H + PI + (2) UMP pyruvate kinase [c]: GDP + H + PEP ⇔ GTP + PYR adentylate kinase (GTP) [c]: AMP + GTP ⇔ ADP + GDP phosphofructokinase [c]: F6P + GTP ⇒ FDP + GDP + H Ribosome assembly (EngA) [c]: GTP + H2O ⇒ GDP + H + PI uridine kinase (GTP:Uridine) [c]: GTP + URI ⇒ GDP + H + UMP Chromosome segregation (Era) [c]: GTP + H2O ⇒ GDP + H + PI guanylate kinase (GMP:ATP) [c]: ATP + GMP ⇔ ADP + GDP Ribosome assembly (EngB) [c]: GTP + H2O ⇒ GDP + H + PI phosphoglycerate kinase [c]: DPG + GDP ⇔ G3P + GTP Ribosome assembly (RbgA) [c]: GTP + H2O ⇒ GDP + H + PI Ribosome assembly (Obg) [c]: GTP + H2O ⇒ GDP + H + PI

Metadata
Created	2012-10-01 15:06:58
Last updated	2012-10-01 15:12:11