FAPydGMP – N6-(2-Deoxy-α,β-d-erythro-pentofuranosyl)-2,6-diamino-4-hydroxy-5-formamidopyrimidine monophosphate

Name
WID	FAPydGMP
Name	N6-(2-Deoxy-α,β-d-erythro-pentofuranosyl)-2,6-diamino-4-hydroxy-5-formamidopyrimidine monophosphate
Traditional name	{5-[(2-amino-5-formamido-6-oxo-3H-pyrimidin-4-yl)amino]-3-hydroxyoxolan-2-yl}methyl phosphate
IUPAC name	{5-[(2-amino-5-formamido-6-oxo-3,6-dihydropyrimidin-4-yl)amino]-3-hydroxyoxolan-2-yl}methyl phosphate

Classification
Type	modified_deoxyribonucleotide_monophosphate

Structure
Empirical formula (pH 7.5)	H₁₄C₁₀N₅O₈P₁
SMILES (pH 7.5)	NC1=NC(=O)C(NC=O)=C(NC2CC(O)C(COP([O-])([O-])=O)O2)N1
Charge (pH 7.5)	-2
Is hydrophobic	False
Molecular weight (Da)	363.22
van der Waals volume (pH 7.5; Å³ molecule^‑1)	274.26
pI	3.59
logP	-6.32
logD (pH 7.5)	-6.67

Function
Reaction participant	5'-nucleotidase (N6-(2-Deoxy-α,β-d-erythro-pentofuranosyl)-2,6-diamino-4-hydroxy-5-formamidopyrimidine monophosphate) [c]: FAPydGMP + H2O ⇒ FAPydG + PI base excision (2,6-diamino-4-hydroxy-5-formamidopyrimidine) [c]: FAPydGMP + H2O ⇒ DR5P + FAPyGN

Metadata
Created	2012-10-01 15:06:57
Last updated	2012-10-01 15:12:09