DUDP – dUDP

Name
WID DUDP View in model
Name dUDP View in model
Traditional name [5-(2,4-dioxo-3H-pyrimidin-1-yl)-3-hydroxyoxolan-2-yl]methyl (phosphonatooxy)phosphonate
IUPAC name [5-(2,4-dioxo-1,2,3,4-tetrahydropyrimidin-1-yl)-3-hydroxyoxolan-2-yl]methyl (phosphonatooxy)phosphonate
Cross references ChEBI: 28850, PubChem: 4551, ThreeDMET: B01441, KEGG: C01346, PDBCCD: DUD, ... 2 more
 
Classification
Type modified_deoxyribonucleotide_diphosphate View in model
 
Structure
Empirical formula (pH 7.5) H11C9N2O11P2
SMILES (pH 7.5) C1(=CC(=O)NC(=O)N1C2(CC(O)C(COP(=O)([O-])OP(=O)([O-])[O-])O2))
Charge (pH 7.5) -3
Is hydrophobic False View in model
Molecular weight (Da) 385.14 View in model
van der Waals volume 
(pH 7.5; Å3 molecule‑1)
271.79
ΔfG'o (pH 7.5, 25C, I = 0; kJ mol‑1) -1796.90
logP -2.06
logD (pH 7.5) -7.01
 
Function
Reaction participant View in model
 
Metadata
Created 2012-10-01 15:06:55
Last updated 2012-10-01 15:12:05