DGDP – dGDP

Name
WID DGDP View in model
Name dGDP View in model
Traditional name [5-(2-amino-6-oxo-1H-purin-9-yl)-3-hydroxyoxolan-2-yl]methyl (phosphonatooxy)phosphonate
IUPAC name [5-(2-amino-6-oxo-6,9-dihydro-1H-purin-9-yl)-3-hydroxyoxolan-2-yl]methyl (phosphonatooxy)phosphonate
Cross references ChEBI: 28862, PubChem: 3652, ThreeDMET: B01227, KNApSAcK: C00019355, KEGG: C00361, ... 3 more
 
Classification
Type deoxyribonucleotide_diphosphate View in model
 
Structure
Empirical formula (pH 7.5) H12C10N5O10P2
SMILES (pH 7.5) C(OP(=O)([O-])OP(=O)([O-])[O-])C1(OC(CC(O)1)N3(C=NC2(C(=O)NC(N)=NC=23)))
Charge (pH 7.5) -3
Is hydrophobic False View in model
Molecular weight (Da) 424.18 View in model
van der Waals volume 
(pH 7.5; Å3 molecule‑1)
297.77
ΔfG'o (pH 7.5, 25C, I = 0; kJ mol‑1) -1403.00
pI 1.50
logP -2.93
logD (pH 7.5) -7.30
 
Function
Reaction participant View in model
 
Metadata
Created 2012-10-01 15:06:54
Last updated 2012-10-01 15:12:02