DCMP – dCMP

Name
WID	DCMP
Name	dCMP
Traditional name	[5-(4-amino-2-oxopyrimidin-1-yl)-3-hydroxyoxolan-2-yl]methyl phosphate
IUPAC name	[5-(4-amino-2-oxo-1,2-dihydropyrimidin-1-yl)-3-hydroxyoxolan-2-yl]methyl phosphate
Cross references	CAS: 1032-65-1, ChEBI: 15918, PubChem: 3538, ThreeDMET: B01198, KEGG: C00239, ... 3 morePDBCCD: DC, BioCyc: DCMP, BiGG: dcmp

Classification
Type	deoxyribonucleotide_monophosphate

Structure
Empirical formula (pH 7.5)	H₁₂C₉N₃O₇P₁
SMILES (pH 7.5)	C2(N(C1(OC(C(C1)O)COP([O-])([O-])=O))C(N=C(C=2)N)=O)
Charge (pH 7.5)	-2
Is hydrophobic	False
Molecular weight (Da)	305.18
van der Waals volume (pH 7.5; Å³ molecule^‑1)	232.71
Δ_fG^'o (pH 7.5, 25C, I = 0; kJ mol^‑1)	-658.20
pI	1.26
logP	-2.68
logD (pH 7.5)	-5.37

Concentrations
Biomass composition (SP4 media, 5% CO₂, 37C; mmol gDCW^‑1)	0.0863136 [c]

Function
Reaction participant	DNA internalization (dCpdCp) (2) dCpdCp[e] + H2O[e] ⇒ (2) DCMP[e] + dCpdCp[c] + H[e] dCMP kinase [c]: DCMP + DCTP ⇔ (2) DCDP cytidylate kinase (dCMP) [c]: ATP + DCMP ⇔ ADP + DCDP DNA polymerization (dACP) [c]: DCMP + DCTP ⇒ dCpdCp + PPI deoxyribonuclease (dCMP) [c]: dCpdCp + H2O ⇒ (2) DCMP + H ... 6 more DNA cleavage (dCMP) [c]: dCpdCp + H2O ⇒ (2) DCMP + H Spontaneous base loss (cytosine) [c]: DCMP + H2O ⇒ CSN + DR5P 5'-nucleotidase (dCMP) [c]: DCMP + H2O ⇒ DC + PI 5'-nucleotidase (dCMP) [c]: ATP + DC ⇒ ADP + DCMP + H DNA resection (dCMP) [c]: dCpdCp + H2O ⇒ (2) DCMP + H DNA polymerization (dCTP) [c]: DCMP + DCTP ⇒ dCpdCp + PPI

Metadata
Created	2012-10-01 15:06:53
Last updated	2012-10-01 15:12:01


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