hm3dCMP – 3'-hydroxymethyl-2'-deoxycytidine monophosphate

Name
WID hm3dCMP View in model
Name 3'-hydroxymethyl-2'-deoxycytidine monophosphate View in model
Traditional name (3-hydroxy-5-{4-[(hydroxymethyl)amino]-2-oxopyrimidin-1-yl}oxolan-2-yl)methyl phosphate
IUPAC name (3-hydroxy-5-{4-[(hydroxymethyl)amino]-2-oxo-1,2-dihydropyrimidin-1-yl}oxolan-2-yl)methyl phosphate
 
Classification
Type modified_deoxyribonucleotide_monophosphate View in model
 
Structure
Empirical formula (pH 7.5) H14C10N3O8P1
SMILES (pH 7.5) OCNC1=NC(=O)N(C=C1)C1CC(O)C(COP([O-])([O-])=O)O1
Charge (pH 7.5) -2
Is hydrophobic False View in model
Molecular weight (Da) 335.21 View in model
van der Waals volume 
(pH 7.5; Å3 molecule‑1)
258.72
pI 0.890
logP -2.69
logD (pH 7.5) -5.67
 
Function
Reaction participant 5'-nucleotidase (3'-hydroxymethyl-2'-deoxycytidine monophosphate)
[c]: H2O + hm3dCMPhm3dC + PI
View in model
 
Metadata
Created 2012-10-01 15:07:00
Last updated 2012-10-01 15:12:15