hm3dC – 3'-hydroxymethyl-2'-deoxycytidine

Name
WID hm3dC View in model
Name 3'-hydroxymethyl-2'-deoxycytidine View in model
Traditional name 1-[4-hydroxy-5-(hydroxymethyl)oxolan-2-yl]-4-[(hydroxymethyl)amino]pyrimidin-2-one
IUPAC name 1-[4-hydroxy-5-(hydroxymethyl)oxolan-2-yl]-4-[(hydroxymethyl)amino]-1,2-dihydropyrimidin-2-one
 
Classification
Type modified_deoxyribonucleoside View in model
 
Structure
Empirical formula (pH 7.5) H15C10N3O5
SMILES (pH 7.5) C(NC1=NC(=O)N(C=C1)C2CC(C(O2)CO)O)O
Charge (pH 7.5) 0
Is hydrophobic False View in model
Molecular weight (Da) 257.24 View in model
van der Waals volume 
(pH 7.5; Å3 molecule‑1)
218.64
pI 7.20
logP -2.20
logD (pH 7.5) -2.20
 
Function
Reaction participant View in model
 
Metadata
Created 2012-10-01 15:07:00
Last updated 2012-10-01 15:12:15