MG_397

Name
WID MG_397 View in model
Protein product MG_397_MONOMER
Cross references GenBank: AAC71625.1, CMR: MG_397, BioCyc: MG_397, SwissProt: P47637
Homologs
 
Classification
Type mRNA View in model
 
Structure
Structure 498220504921 MG_395 MG_396 MG_397 MG_398 MG_399 MG_400 View in model
Sequence Chromosome: Mgenitalium_Chr_1, Coordinate: 500720 (nt), Length: 1701 (nt), Direction: Reverse, G/C content: 25.5%, Sequence:
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ATGCTGGTTTTTCTAATCTTGCTCCCTTTCTTACTACTAGTAATTTTTGG
TGCTTATCTATTAGTTTGTCTTTTTGTTAGACAAAATAACTTACTTTTAA
AAAAAACCAAACAACTCTATAATAACTTGAAATTAAGCAATTTCAATTGT
GTGATTAGTCCATTTCAATTACTAAGAAATGAAAAACAAGCGTTAGAACA
ATCCATTAAAGTTTTAAAACAGTTTCAAATCAAATTTGATAATGAAATCA
ATTCAGCTTTTGAGCAACTAACAGTTTACAGTAAACCAAATAATATTTAT
CGTTTCATCTGATTTAATAGAAATATTAAGCTCTTAAATAAAAATCTTCA
ACATCTATATACAAAACAACAAGAATACATTAATCTAACTAAGAACGCAA
TTGTTTATTTCAACAATAGCTATGATTGTTTAGTTTTTTATCGTCAGGCT
TTCTGTTTTTTAAACCAATTTATTAATAATTTTTTAATTGAAAAATATGA
TTCGCTTTTCTATTTAAATGTTCTTAACAGGATTTCGCTCTTGTTTAAAG
AGATAGAAAATTGTATTCAAGCTAAAGATGTAGAAAAGCAAATTGCTTTT
TTAAACAAATTACATAACATTCTCAGTCAAACAATTATTACTGCTAACAG
GCAATATATGTTTGATATTAAGTTAAGTTATTTAACCCATCACTTTAAGG
TTTTAATTCAAAAGGTAAAACAAATGGAATTAATGAAGAATAAAGTAATT
AACAGTCAAGATCTCTTAAAACTTCATGAATTGATTAATAACATTACCAT
TAAATTAAAGGATTGTACCAATTTTCTTAATAACTTAAATTTAATGCTAT
GCGAAAGGAATATGGATGAAGTTCAAGAGGCGATTAGTTGACTTTTTCAA
GCAGTTAGTTCCAAAGAAAAAAGCATTAATTTAGTGGTTGAAAATATTGA
TGATTTTCGTAATCAAATTCAACAATATGAAAAGAAAAATGAGCTTTTAA
AAACAACAATTAAAGCCATTGAATTAGTGTTCCAAAATGAAACAGATGTG
CATGATTTAATTATTGAGCTTAATGAGAACTGCGATCTAATTACTAAAAA
TATTAATAACTTAAACCATCAAAGTTTAGCTCAGAATCAAATCAATTATG
AAAAACTGTTTTACTTGATGAGTCAAACAAATCAAGCTTTAGAAAAACTG
AAAAATTCACTAACTGATTTACTTAATTTAGCAGTTAATAAGTTTGATGA
CTATCGCTTTTTTGTCTATACTTTAGATGATTTCCGATTTAAATTTTTTC
AGATTGAAAATTTAATTAGCGATCAAGATTTAAAGGTTCCTGCTAAAACA
TTGCAAGTAATTAATAAATCGAAATTAGAACTTGATAACATCTTCACTGA
AGCTAATAATAACTATTTAGGTACTTTTAATTTGTTTAGTGAAAAGATAG
ATTTATTGCAAATTCAATTGACTGAAGTTATTTGTGATGTTGTTAGTTTA
GTTAACTTAAGGCTAATGTGCAAACAAGCTTTTCTTTTTGCAAATAAATA
TCGTCAAAAGAGTAGTCATATCGATAGATCATTAGAACAGTTAACAAAAC
TATACAATCGACAAAACTATCCTGATACATTAGAAGGATTAATTAATCTT
TTAACTAAAATTAAAACCAATACAAAACAAGACTATCTGGAACTGAATTA
A
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View in model
Transcription unit TU_288 View in model
Empirical formula (pH 7.5) H18113C16411N6708O11838P1701
Molecular weight (pH 7.5; Da) 551407.97 View in model
 
Functional genomics
Is essential
No (Show evidence)
View in model
Relative expression
1.96428 (dimensionless) (Show evidence)
View in model
Half life
4.425 (min) (Show evidence)
View in model
Extinction coefficient 
(260 nm, 25C, pH 7.0)
17860400
pI 4.02
 
Comments
Comments Septation ring formation regulator, EzrA [PUB_0110]; two-component sensor histidine kinase vraS [PUB_0192];
References
  1. Bernstein JA, Khodursky AB, Lin PH, Lin-Chao S, Cohen SN. Global analysis of mRNA decay and abundance in Escherichia coli at single-gene resolution using two-color fluorescent DNA microarrays. Proc Natl Acad Sci U S A 99, 9697-702 (2002). WholeCell: PUB_0602, PubMed: 12119387

  2. Chen J, Anderson JB, DeWeese-Scott C, Fedorova ND, Geer LY, He S, Hurwitz DI, Jackson JD, Jacobs AR, Lanczycki CJ, Liebert CA, Liu C, Madej T, Marchler-Bauer A, Marchler GH, Mazumder R, Nikolskaya AN, Rao BS, Panchenko AR, Shoemaker BA, Simonyan V, Song JS, Thiessen PA, Vasudevan S, Wang Y, Yamashita RA, Yin JJ, Bryant SH. MMDB: Entrez's 3D-structure database. Nucleic Acids Res 31, 474-7 (2003). WholeCell: PUB_0110, PubMed: 12520055, URL: http://www.ncbi.nlm.nih.gov/Structure/

  3. Forsyth RA, Haselbeck RJ, Ohlsen KL, Yamamoto RT, Xu H, Trawick JD, Wall D, Wang L, Brown-Driver V, Froelich JM, C KG, King P, McCarthy M, Malone C, Misiner B, Robbins D, Tan Z, Zhu Zy ZY, Carr G, Mosca DA, Zamudio C, Foulkes JG, et al. A genome-wide strategy for the identification of essential genes in Staphylococcus aureus. Mol Microbiol 43, 1387-400 (2002). WholeCell: PUB_0192, PubMed: 11952893

  4. Glass JI, Assad-Garcia N, Alperovich N, Yooseph S, Lewis MR, Maruf M, Hutchison CA 3rd, Smith HO, Venter JC. Essential genes of a minimal bacterium. Proc Natl Acad Sci U S A 103, 425-30 (2006). WholeCell: PUB_0193, PubMed: 16407165

  5. Weiner J 3rd, Zimmerman CU, Göhlmann HW, Herrmann R. Transcription profiles of the bacterium Mycoplasma pneumoniae grown at different temperatures. Nucleic Acids Res 31, 6306-20 (2003). WholeCell: PUB_0569, PubMed: 14576319

 
Metadata
Created 2012-10-01 15:07:27
Last updated 2012-10-01 15:13:38