MG_340 – DNA-directed RNA polymerase, beta subunit

Name
WID MG_340 View in model
Name DNA-directed RNA polymerase, beta subunit View in model
Symbol rpoC
Protein product MG_340_MONOMER
Cross references GenBank: AAC71565.1, CMR: MG_340, BioCyc: MG_340, SwissProt: P47582
Homologs
 
Classification
Type mRNA View in model
 
Structure
Structure 428080436959 MG_340 MG_341 View in model
Sequence Chromosome: Mgenitalium_Chr_1, Coordinate: 430580 (nt), Length: 3879 (nt), Direction: Reverse, G/C content: 34.7%, Sequence:
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ATGACAACAACAAGACGTAATAAAAGAAATAACAAGCTTTATAAAAACAT
TAAAGCAATTAAACTTTCCATCGCTTCCAATGACACCATTTTGAACTGAT
CTGAAGGGGAAGTTACAAAAGCTGAAACCATTAACTATAAATCATTAAAA
CCAGAACCTGGAGGCTTGTTTGATGAAGCAATCTTTGGACCTGTTAAGGA
CTATGAATGTGCTTGTGGCAAGTTCAAAAAGATTAAATACCGTGGTGTGA
GGTGTGATCGCTGTGGGGTGTGAGTTACTGAATCTATTGTACGTAGAGAA
AGGATGGGACATATTGCACTTGTGAGTCCTGTAGCTCACATTTGGATGTC
AAAAGAATTACCATCTCCTTCCAAAATATCATTAGTTTTAAACATCTCTT
ACAAAGAGGTTGAACAGGTTTTGTACTTTGTTAACTACATAGTACTTGAT
ACAGGTAAGATCAAAGATGATAAAATCATGCCTTTTAAGTTCAAAGAAGT
TTTGGACTTAACTGGTAAGGGTTCACTTTCAACACGACAAAAAATGCGTC
GTGTGATAGGTTATATCTTCAGAAATCTCATTAAAAGTAAGAGTAGTGAA
GATTACCGTAAGGGAAAAATCTTTTATGAAAGTTTAAAAAACAGCTCTCT
CCCCTTTTCTCTAAATGATGCTTTTAATTACATTAAGAAGTACACTGGTT
TTAGGGTTGGAATAGGGGCTGAAGCAATTTTGGAATTGCTTAATAAAATC
GATCTTAACTTGGAATTTAGCAGGTTAAATGATGCTTTAAGAAAAGCCAA
GAAAGATAGTGTTGAAGATGCTAAAGTTAAGAAGATCTTAAGACAACTGG
AAACTATTAGTTGGTTTAGAAATTCTAAGCTTCATCCTAAAAACATGATC
TTACATACTGTTCCAGTTATCCCCCCTGATATCAGACCTATTATCCAACT
TGATGGTGCTAAGTTTACCACCAGTGACATCAACAATTTTTACCGCAGGG
TAATCATTAGAAATGACCGATTAAGAAGGATTTTGGAAGATGGTACTGTA
CCTTCTATTGTTGTTAACAATGAAAAAAGACTTTTACAAGAGTCTGTTGA
TGCTTTATTTGATAACTCTTCACGTCATAAACCATCACTTTCCAAAGACA
AACGGTCATTGAAATCTTTAACAGATCGTTTAAAAGGAAAACAAGGTTTA
TTTAGACACAACTTACTTGGTAAAAGAGTTGATTATTCAGGTAGAAGTGT
AATTGTGGTTGGCCCTGAATTGAAGATGTATGAAGTTGGGATCCCAGCAC
TAATGATCTTAAAGCTGTTTAAACCCTTTATTATCCATGGATTGATCAAT
AAGTTTGATGAAAATGGTAATGAGATTAGACCAATTGCCGCTTCCATCAG
ACAAGCTGAAGATATGATTAAAAACCAGGATGATCTTATCTGGGGAATAG
TTTATGATGTTATCAAAGATCGTCCCGTTTTACTAAATCGTGCTCCAACC
CTACATAGGTTAGGGATCCAAGCATTTGAACCAAGAATTGTTGATGGTAA
AGCAATTAGATTACACCCATTAGTAACTACTGCATTTAATGCTGATTTTG
ATGGTGATCAGATGGCAGTTCATGTTCCTTTAAGTGAGAATGCAGTTAAT
GAAGCAAGAGCTGTTCTGCTTGCATCAAAACATATCTTAGGTTTGAAAGA
TGGAAGACCTATTGTAACTCCTACTCAGGACATGGTTTTAGGTAACTATT
ATCTAACCACAGAGAGAAAAGGACAGTTGGGAGAGGGGATTATCTTCAGC
ACAGTTTATGAAGCACGTGCTGCTTATGAAAGTCAAAAGGTTCATTTACA
TGCTATTGTAGGGATAAGTACTAAAGCATTTCCCAACAAGAAGTTTGCAT
GCCAAGGAACTTTAATAACAACAGTTGGTAAGATTATCTTTAATGATGTT
TTAGGCAATAATGTTCCTTATATTAATGACGGGGAATTTGATGAAAATGC
ATGTCCCGAAAAGTTCATTGTGAAACAGGGAGAAGATGTAAGACAATCAA
TTTTAAAGCATCAAATTATCCCTGCATTTTCCAAAAAGGTTATTTCCAAG
TTAATCGATCTACTCTATCTTTTATTGGAATTTAAAGACCTTCCTAAAAC
ACTTGATAATATCAAAGCACTTGGCTTTAAGTACTCTACTTTTTCTTCAA
CTACTGTTTCAGTATTTGATATCCCTAAGTACACCAATAAACAAAATTAC
TTTGATAGTGCTGATCAACAGGTGCTGAAATACAAACAGTTTTATAACAA
GGGTTTGTTAACCGATGATGAACGTTATAAACGCGTTGTGAAGTTATGAA
ACAATGTGAAAGAAAAAGTATCTGATGAGATCCAAAACTTAATTAAACAA
GAACAGTACCGTGATAATTCCATTGTGGTAATGGCTGATTCAGGTGCTAG
ATGTAACATTTCTAACTTTACCCAGTTATTTGGGATGCGAGGCTTAATGT
CTAAAAGCTTTAACTATGAAAGAAATAACCAATCTAAGATCATTAAAGAT
ACGATAGAAGTTCCTATTAAACACTCCTTTTTTGAAGGTTTGACCATTAA
TGAATACTTCAACTCTTCTTATGGAGCGAGAAAAGGGATGACAGATACTG
CAATGAAAACAGCAAAGTCTGGTTATATGACAAGAAAGCTAGTAGATGCT
ACTCATGAATTAATTATTAACCATGATGATTGTGGAACAAGAAAAGGAAT
TGTTGTTGAAGCAATTGTTGAAACCAAAACCAAATCCTTGATTGAATCAT
TATTTGACAGGATTGTTAATCGCTACTCAATTACTCCTATAGTTGATCCT
GAAACACAAAAAACTATTGTAGAAGCTAACAGTCTTATTACAACGCAATT
AGCTAAACAGATTTGTGCAACATCTATTAAAGAAGTTTTAGTTAGATCTG
TTATCTATTGTGAAAGGGAAAATGGTATCTGTCAATACTGCTTTGGCATT
GACTTGTCAACTGGTAAGTTGGTGGAATTGGGAACTGCTGTTGGGGTGAT
TGCTGCTCAATCAATTGGTGAACCTGGGACCCAATTGACAATGCGTACTT
TCCATACTGGGGGAGTTTCAACTGAAAACAACTTAGCACAAGGCTTTGAA
CGTTTAAAACAGATCTTTGAAGTAGTTACTCCTAAAGATTTTGAAAAAGC
AGTTATCTCTGAAGTGAAAGGAACAGTTAAATCAATTACTACTGTTCAAA
ACGCTCAGGAAGTAGTGATTAAATCAAACGTTGATGAGAGGATTTATACT
ATCCCTTTCAGTGCTCAAATACGTGTTCATGTTGGTGATCAAGTTTCACC
AGGTTCTAAGATTACAGAAGGTTCTGTTGATATTAAACAACTTTTGCGAA
TTGCAGGTATCCAAAGGGTAAGACAATACATGATTGTAGAGATCCAAAAA
GTGTATAGGATTCAAGGGATAGATATTGCTGATAAGTATGTAGAAATTAT
TATCAGACAACTAACTAATTTGTTGCAAGTAACAGATGCAGGTAACAGCA
ATTTATTTGTTGGTCAGTTAGTGCATAGCCATTATCTCAATGAACTAAAT
AAGAGCTTACTTTTAGCTGGAAAGATGCCTGTTATTGCAATTAATCAGGT
GTTTGGAATTGATGAAGCGGCAAGTAAATCTAACTCCTTTTTAAGTGCTG
CATCCTTCCAAGATACCAAAAAAATCCTAACTGATGCTGCTGTTAAGAAC
CAAGTAGACTATCTTTTAGGTTTAAAAGAGAATGTTATTATTGGTGGAAA
AATTCCAGCAGGAACAGGATTTTTAACTGATGAAGAGTTAACTTTCTTAG
GTAGCAAAACAGTTGCTGAAGAGTATTAA
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3879
View in model
Transcription unit TU_242 View in model
Empirical formula (pH 7.5) H41474C37594N15807O27012P3879
Molecular weight (pH 7.5; Da) 1267058.97 View in model
 
Functional genomics
Is essential
Yes (Show evidence)
View in model
Relative expression
1.96428 (dimensionless) (Show evidence)
View in model
Half life
6.0 (min) (Show evidence)
View in model
Extinction coefficient 
(260 nm, 25C, pH 7.0)
40088900
pI 3.94
 
Comments
References
  1. Bernstein JA, Khodursky AB, Lin PH, Lin-Chao S, Cohen SN. Global analysis of mRNA decay and abundance in Escherichia coli at single-gene resolution using two-color fluorescent DNA microarrays. Proc Natl Acad Sci U S A 99, 9697-702 (2002). WholeCell: PUB_0602, PubMed: 12119387

  2. Glass JI, Assad-Garcia N, Alperovich N, Yooseph S, Lewis MR, Maruf M, Hutchison CA 3rd, Smith HO, Venter JC. Essential genes of a minimal bacterium. Proc Natl Acad Sci U S A 103, 425-30 (2006). WholeCell: PUB_0193, PubMed: 16407165

  3. Weiner J 3rd, Zimmerman CU, Göhlmann HW, Herrmann R. Transcription profiles of the bacterium Mycoplasma pneumoniae grown at different temperatures. Nucleic Acids Res 31, 6306-20 (2003). WholeCell: PUB_0569, PubMed: 14576319

 
Metadata
Created 2012-10-01 15:07:25
Last updated 2012-10-01 15:13:29