MG_332

Name
WID MG_332 View in model
Symbol yebC
Protein product MG_332_MONOMER
Cross references GenBank: AAC71556.1, CMR: MG_332, BioCyc: MG_332, SwissProt: P47574
Homologs
 
Classification
Type mRNA View in model
 
Structure
Structure 413111418831 MG_329 MG_330 MG_331 MG_332 MG_333 MG_334 View in model
Sequence Chromosome: Mgenitalium_Chr_1, Coordinate: 415611 (nt), Length: 720 (nt), Direction: Reverse, G/C content: 30.4%, Sequence:
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51
101
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651
701
ATGCCACGTAAGCATCTAATTGCTAATCAAACTAATAAAAAACAACAAAC
AAGTGCAAAACAACTTCAAAAACTAGCAAAAAGAATAGCTTCAGCTGTTA
AAAAAGGTGGAACTAATATCCAGTCAAATCCACATCTAAAAGTTGCAGTT
GATCTTGCTTTAGCTAAGGGTCTAAGCATGGATTCAATTAAAAGAAATAT
CCATGGTAGTGAAAAAGATACAACTAAAATTAGCGAGTTTTGTTATGAGA
TTTTTGGACCAAATGGTGTTGGAATTATTGTGTTTGGACTAACTGATAAT
CCTAACCGTTTACTCAGTAGTTTAAACGGTTATTTAGCTAAACTAAAAGG
ACAATTAGCCAAGCCAAATAGCGTCAAGATTAATTTTCAAGAAGAAGGGA
TTATCTTTGTTAATAAAAATAACTATTTGAAAGATGATCTAATTGAATTA
TTAATTTTGGACAATATTAACTTAATTGATGTTGATTATGATGAAGAGTG
TTTTGAAATTAGCTTGCATTCAAATAGTTATTTTCATGCAAAGGAGCTGT
TGAAAAAAAACAATTTTTCAATAGTAGATAGTGAAATTAAATTGGTACCT
CTTTTAACTGTTGATTTAGATAGAAATCAGCAAACTTTATTATCACGTTT
TCTCAATGCTTGTGAGGAAGATGATGACATTCAGTTTGTTGTTCATAATG
CCAACCCATGGGAAGAGTAG
50
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720
View in model
Transcription unit TU_233 View in model
Empirical formula (pH 7.5) H7692C6971N2913O4998P720
Molecular weight (pH 7.5; Da) 234547.01 View in model
 
Functional genomics
Is essential
Yes (Show evidence)
View in model
Relative expression
0.851454 (dimensionless) (Show evidence)
View in model
Half life
3.5 (min) (Show evidence)
View in model
Extinction coefficient 
(260 nm, 25C, pH 7.0)
7521000
pI 3.92
 
Comments
Comments negatively regulates the quorum-sensing response regulator pqsR of the PQS system in Pseudomonas aeruginosa by binding at its promoter region [PUB_0180]; highly conserved protein [PUB_0180];
References
  1. Bernstein JA, Khodursky AB, Lin PH, Lin-Chao S, Cohen SN. Global analysis of mRNA decay and abundance in Escherichia coli at single-gene resolution using two-color fluorescent DNA microarrays. Proc Natl Acad Sci U S A 99, 9697-702 (2002). WholeCell: PUB_0602, PubMed: 12119387

  2. Glass JI, Assad-Garcia N, Alperovich N, Yooseph S, Lewis MR, Maruf M, Hutchison CA 3rd, Smith HO, Venter JC. Essential genes of a minimal bacterium. Proc Natl Acad Sci U S A 103, 425-30 (2006). WholeCell: PUB_0193, PubMed: 16407165

  3. Liang H, Li L, Dong Z, Surette MG, Duan K. The YebC family protein PA0964 negatively regulates the Pseudomonas aeruginosa quinolone signal system and pyocyanin production. J Bacteriol 190, 6217-27 (2008). WholeCell: PUB_0180, PubMed: 18641136

  4. Weiner J 3rd, Zimmerman CU, Göhlmann HW, Herrmann R. Transcription profiles of the bacterium Mycoplasma pneumoniae grown at different temperatures. Nucleic Acids Res 31, 6306-20 (2003). WholeCell: PUB_0569, PubMed: 14576319

 
Metadata
Created 2012-10-01 15:07:25
Last updated 2012-10-01 15:13:28