MG_302 – metal ion (cobalt) ABC transporter, permease protein, putative

Name
WID MG_302 View in model
Name metal ion (cobalt) ABC transporter, permease protein, putative View in model
Symbol cbiQ
Protein product MG_302_MONOMER
Cross references GenBank: AAC71524.1, BioCyc: MG_302, CMR: MG_302, SwissProt: P47544
Homologs
 
Classification
Type mRNA View in model
 
Structure
Structure 369494375448 MG_300 MG_301 MG_302 MG_303 MG_304 MG_305 View in model
Sequence Chromosome: Mgenitalium_Chr_1, Coordinate: 371994 (nt), Length: 954 (nt), Direction: Reverse, G/C content: 27.8%, Sequence:
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51
101
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951
ATGCAAAAAACCAGTTTTTTAAACAAAATTGACCCACTTCTAAAATTGTG
GTTTTGACTAATTAGTTTAGTTGTTGCTTTTCTACCGCTAGGATTATATG
GTCTTGTAATTATTAACTTAGTTTTTTTAACCCTAGTTGTAATTAGTGAG
AAAAGGGTTAAAAGTGCATTAATTATTTTGAGTTGGATGTTATTTTTCTT
GTGGTTTAATGTAATTGTTAACGGTTTTATCTTTTTACCAAATACTGCTT
TAAGCGTTGATCAGAACCATAATTTTTTAGGAAGTTTTATCTATTCAGGT
GGTAATAATTTTGGTGGTGTTAGCTGGTGAAGTTTTAATCTACGTTCATT
TTTACGATCCTTTGTAATTGCATTAAGGATTAGTATGCTTTTCAGTGCTT
CTTTTTTACTGACAACTTCAAGTTCTATCTATGAATTGGCTTGAGCAGTT
GAGAGGTTTTTTAAGTTTCTTAAGTTATTTCATATTAAGGTTCAACCAAT
TAGTATCTTGCTTGCAGTTATATTTAAATTACTCCCAACTGTTAAAAGTG
AAATTATAAGAATTAAACAAGCTCAAGCTACTAGAGGTTTTATCTATAAC
AAGTGTTCGTTTTTAAATCCTTTCAAGATTAAAACCCTTTTTATTCCCGT
ATTACTTTCAACAGTTAAAAAAACAGAAACAACAGCGTTTGCTCTACAAG
CTAAAGGTTATGATTTAAATAACACTAACAGAACTCATTATCCTTTAAAA
TACAACTTATTAAACGGGGTATTTTTATTAGTGGGTTTACTTTTATTTAG
TATTTTATTAATTGCTAATAACTGGAATTTAGTTTACTGAGAAAATCCTA
ATTATAGTTTCAATTTTGATAAGCAAAACTTTATTTTTTTAAGAGCAATT
AATAGCAATAATTTGCTGTATTTTTGACAGATAGAATTAATTGCAATAGG
CTAA
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954
View in model
Transcription unit TU_205 View in model
Empirical formula (pH 7.5) H10105C9150N3600O6770P954
Molecular weight (pH 7.5; Da) 308371.80 View in model
 
Functional genomics
Is essential
Yes (Show evidence)
View in model
Relative expression
0.560583 (dimensionless) (Show evidence)
View in model
Half life
2.0 (min) (Show evidence)
View in model
Extinction coefficient 
(260 nm, 25C, pH 7.0)
9841300
pI 4.94
 
Comments
Comments no predicted substrate binding protein in M. genitalium; cobalt/nickel transporter [PUB_0113, PUB_0440]; associated with the cobalamin (vitamin B12) biosynthetic pathways [PUB_0110];
References
  1. Bernstein JA, Khodursky AB, Lin PH, Lin-Chao S, Cohen SN. Global analysis of mRNA decay and abundance in Escherichia coli at single-gene resolution using two-color fluorescent DNA microarrays. Proc Natl Acad Sci U S A 99, 9697-702 (2002). WholeCell: PUB_0602, PubMed: 12119387

  2. Chen J, Anderson JB, DeWeese-Scott C, Fedorova ND, Geer LY, He S, Hurwitz DI, Jackson JD, Jacobs AR, Lanczycki CJ, Liebert CA, Liu C, Madej T, Marchler-Bauer A, Marchler GH, Mazumder R, Nikolskaya AN, Rao BS, Panchenko AR, Shoemaker BA, Simonyan V, Song JS, Thiessen PA, Vasudevan S, Wang Y, Yamashita RA, Yin JJ, Bryant SH. MMDB: Entrez's 3D-structure database. Nucleic Acids Res 31, 474-7 (2003). WholeCell: PUB_0110, PubMed: 12520055, URL: http://www.ncbi.nlm.nih.gov/Structure/

  3. Glass JI, Assad-Garcia N, Alperovich N, Yooseph S, Lewis MR, Maruf M, Hutchison CA 3rd, Smith HO, Venter JC. Essential genes of a minimal bacterium. Proc Natl Acad Sci U S A 103, 425-30 (2006). WholeCell: PUB_0193, PubMed: 16407165

  4. Kanehisa M, Araki M, Goto S, Hattori M, Hirakawa M, Itoh M, Katayama T, Kawashima S, Okuda S, Tokimatsu T, Yamanishi Y. KEGG for linking genomes to life and the environment. Nucleic Acids Res 36, D480-4 (2008). WholeCell: PUB_0113, PubMed: 18077471, URL: http://www.genome.jp/kegg/

  5. Ren Q, Chen K, Paulsen IT. TransportDB: a comprehensive database resource for cytoplasmic membrane transport systems and outer membrane channels. Nucleic Acids Res 35, D274-9 (2007). WholeCell: PUB_0440, PubMed: 17135193, URL: http://membranetransport.org/

  6. Weiner J 3rd, Zimmerman CU, Göhlmann HW, Herrmann R. Transcription profiles of the bacterium Mycoplasma pneumoniae grown at different temperatures. Nucleic Acids Res 31, 6306-20 (2003). WholeCell: PUB_0569, PubMed: 14576319

 
Metadata
Created 2012-10-01 15:07:23
Last updated 2012-10-01 15:13:23