MG_199 – ribonuclease HIII, putative, frameshift

Name
WID MG_199 View in model
Name ribonuclease HIII, putative, frameshift View in model
Symbol rnhC
Protein product MG_199_MONOMER
Cross references GenBank: AAC71417.1, BioCyc: MG_199, CMR: MG_199
Homologs
 
Classification
Type mRNA View in model
 
Structure
Structure 234093239801 MG_195 MG_196 MG_198 MG_199 MG_200 MG_201 View in model
Sequence Chromosome: Mgenitalium_Chr_1, Coordinate: 236593 (nt), Length: 708 (nt), Direction: Reverse, G/C content: 32.3%, Sequence:
1
51
101
151
201
251
301
351
401
451
501
551
601
651
701
TTGCAACATTACAAACCAGCTGATTTTTATTTAATTGGCAGTGATGAATC
TGGCAAGGGTGATAGTTTTGGTGGGATTTGTGTTAGTGCTGTTTTAATTG
AAAAAAAACAGCTTATTAATCTTGAAAATTTACAAGTAACTGATTCAAAA
AAACTCAGTGATCACACTGTCAAACTGTTAGCTAAATCGATCCAAACAAC
AGTAATGGATCACCATACAATTACATTAGATCCCAAGCAGTATAATGATT
TGACAAAATCACTGAAAAATACCAATTTACTTTTGACCAATTTACACTGT
CAGCTTTACCAAAAGTTACTGGAAAAAAATCAGTTATTAAGACAAACAGT
AACAATTAGCATTGACCAGTTTGCCAATCAAGAGTTATTTGTTAACTATC
TAAATAAGCTAACTAATTTCACTGATAAAACAGTGTTATTACCTGATCAG
TTTCTAATTAATGGTGAAACTAAGTCACTGGTGATTGCAGCTGCATCTAT
CTTAGCAAGAGATAGCTTTATTAATCAGCTGCAATTACTCAACCAAAAGG
TAAACTATGATTTACCCAAAGGCAGTAGTCATGGCATTGAACAAGCGTTG
TTATTTCTTAACCAACAACGCGGTTTTAGTCAAATTGAACAGTTTAAACA
GGTGGCAAAACTTAACTTTAAAAACGTTACTAAGTTTTTGCAACAGTTGG
TTTATTAG
50
100
150
200
250
300
350
400
450
500
550
600
650
700
708
View in model
Transcription unit TU_121 View in model
Empirical formula (pH 7.5) H7567C6858N2874O4922P708
Molecular weight (pH 7.5; Da) 230929.91 View in model
 
Functional genomics
Is essential
Yes (Show evidence)
View in model
Relative expression
1.29325 (dimensionless) (Show evidence)
View in model
Half life
4.425 (min) (Show evidence)
View in model
Extinction coefficient 
(260 nm, 25C, pH 7.0)
7294700
pI 3.90
 
Comments
Comments endolytically cleaves RNA from hybrid DNA-RNA molecules
References
  1. Bernstein JA, Khodursky AB, Lin PH, Lin-Chao S, Cohen SN. Global analysis of mRNA decay and abundance in Escherichia coli at single-gene resolution using two-color fluorescent DNA microarrays. Proc Natl Acad Sci U S A 99, 9697-702 (2002). WholeCell: PUB_0602, PubMed: 12119387

  2. Glass JI, Assad-Garcia N, Alperovich N, Yooseph S, Lewis MR, Maruf M, Hutchison CA 3rd, Smith HO, Venter JC. Essential genes of a minimal bacterium. Proc Natl Acad Sci U S A 103, 425-30 (2006). WholeCell: PUB_0193, PubMed: 16407165

  3. Weiner J 3rd, Zimmerman CU, Göhlmann HW, Herrmann R. Transcription profiles of the bacterium Mycoplasma pneumoniae grown at different temperatures. Nucleic Acids Res 31, 6306-20 (2003). WholeCell: PUB_0569, PubMed: 14576319

 
Metadata
Created 2012-10-01 15:07:18
Last updated 2012-10-01 15:13:08