MG_009 – deoxyribonuclease

Name
WID MG_009 View in model
Name deoxyribonuclease View in model
Symbol tatD
Synonyms mttC, ychF
Protein product MG_009_MONOMER
Cross references GenBank: AAC71225.1, BioCyc: MG_009, CMR: MG_009, SwissProt: P47255
Homologs
 
Classification
Type mRNA View in model
 
Structure
Structure 875114540 MG_006 MG_007 MG_008 MG_009 MG_010 MG_011 MG_012 View in model
Sequence Chromosome: Mgenitalium_Chr_1, Coordinate: 11251 (nt), Length: 789 (nt), Direction: Forward, G/C content: 27.6%, Sequence:
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ATGGAATACTTTGATGCACATTGTCATTTAAATTGTGAACCTTTACTGAG
TGAAATTGAAAAAAGCATCGCTAATTTCAAATTAATTAATTTAAAAGCAA
ATGTTGTAGGTACAGATTTGGATAATTCTAAAATTGCTGTTGAATTAGCT
AAAAAATATCCTGATCTTTTAAAAGCAACCATAGGTATCCATCCAAATGA
TGTTCATTTAGTTGATTTTAAAAAGACAAAAAAACAACTTAATGAACTAT
TAATAAATAACAGAAATTTCATAAGTTGTATTGGTGAATATGGTTTTGAT
TATCACTACACAACAGAATTTATTGAATTGCAAAACAAATTCTTTGAGAT
GCAATTTGAAATAGCTGAAACTAATAAATTGGTTCACATGCTTCATATTC
GTGATGCTCATGAAAAAATTTATGAAATATTAACAAGATTAAAGCCAACT
CAACCTGTGATTTTTCATTGTTTCAGTCAAGATATAAATATTGCTAAAAA
GCTACTATCATTAAAAGATTTAAATATTGACATCTTCTTTTCTATCCCAG
GGATAGTTACTTTTAAGAATGCTCAAGCATTACATGAAGCTTTAAAGATT
ATTCCTAGTGAATTACTTTTAAGTGAAACTGACTCACCGTGATTAACCCC
TTCTCCTTTTCGAGGCAAAGTTAACTGACCTGAATATGTAGTTCATACTG
TTAGCACTGTTGCTGAAATAAAAAAAATAGAAATTGCTGAAATGAAGCGA
ATTATTGTTAAAAATGCAAAAAAATTATTTTGACATTAA
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789
View in model
Transcription unit TU_003 View in model
Empirical formula (pH 7.5) H8412C7622N3141O5489P789
Molecular weight (pH 7.5; Da) 256278.09 View in model
 
Functional genomics
Is essential
No (Show evidence)
View in model
Relative expression
0.560583 (dimensionless) (Show evidence)
View in model
Half life
4.8 (min) (Show evidence)
View in model
Extinction coefficient 
(260 nm, 25C, pH 7.0)
8216500
pI 3.98
 
Comments
References
  1. Bernstein JA, Khodursky AB, Lin PH, Lin-Chao S, Cohen SN. Global analysis of mRNA decay and abundance in Escherichia coli at single-gene resolution using two-color fluorescent DNA microarrays. Proc Natl Acad Sci U S A 99, 9697-702 (2002). WholeCell: PUB_0602, PubMed: 12119387

  2. Glass JI, Assad-Garcia N, Alperovich N, Yooseph S, Lewis MR, Maruf M, Hutchison CA 3rd, Smith HO, Venter JC. Essential genes of a minimal bacterium. Proc Natl Acad Sci U S A 103, 425-30 (2006). WholeCell: PUB_0193, PubMed: 16407165

  3. Weiner J 3rd, Zimmerman CU, Göhlmann HW, Herrmann R. Transcription profiles of the bacterium Mycoplasma pneumoniae grown at different temperatures. Nucleic Acids Res 31, 6306-20 (2003). WholeCell: PUB_0569, PubMed: 14576319

 
Metadata
Created 2012-10-01 15:07:10
Last updated 2012-10-01 15:12:39