MG_008 – tRNA modification GTPase TrmE

Name
WID MG_008 View in model
Name tRNA modification GTPase TrmE View in model
Symbol mnmE
Synonyms thdF, trmE
Protein product MG_008_MONOMER
Cross references GenBank: AAC71224.1, CMR: MG_008, BioCyc: MG_008, SwissProt: P47254
Homologs
 
Classification
Type mRNA View in model
 
Structure
Structure 742313752 MG_005 MG_006 MG_007 MG_008 MG_009 MG_010 MG_011 View in model
Sequence Chromosome: Mgenitalium_Chr_1, Coordinate: 9923 (nt), Length: 1329 (nt), Direction: Forward, G/C content: 26.0%, Sequence:
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ATGAAAAGCGAAATTAATATTTTTGCACTAGCAACTGCACCTTTTAATAG
TGCATTACATATTATTAGGTTTTCTGGTCCTGATGTTTATGAGATTTTAA
ACAAGATAACTAATAAAAAAATAACAAGAAAAGGGATGCAAATTCAACGC
ACATGGATAGTTGATGAAAACAATAAGCGAATTGATGATGTGCTATTATT
TAAATTTGTCTCTCCAAATTCTTATACAGGAGAAGATTTAATTGAAATTT
CTTGTCATGGTAACATGTTGATCGTTAATGAAATTTGCGCACTTCTTTTA
AAAAAAGGAGGTGTTTATGCCAAACCTGGTGAATTTACCCAAAGGAGTTT
TTTAAATGGAAAAATGAGTTTACAACAAGCTAGTGCTGTAAATAAATTGA
TTTTATCTCCTAACTTATTAGTTAAAGATATAGTCTTAAATAATTTAGCG
GGTGAAATGGATCAACAATTAGAACAAATAGCTCAACAAGTTAATCAATT
AGTAATGCAAATGGAAGTAAACATTGATTATCCAGAATATCTTGATGAAC
AAGTAGAACTATCAACTTTAAATAATAAAGTTAAATTGATTATTGAAAAG
CTTAAAAGAATTATTGAAAATAGTAAACAACTCAAAAAACTTCACGATCC
TTTTAAAATTGCCATTATAGGCGAAACTAATGTAGGTAAATCTTCTTTAC
TCAACGCTTTATTAAATCAAGATAAAGCGATAGTTTCAAATATTAAAGGT
AGTACACGCGATGTTGTTGAAGGGGATTTCAATTTAAATGGTTATTTAAT
CAAGATCTTAGATACTGCAGGTATCCGTAAACATAAAAGTGGGCTTGAAA
AAGCAGGAATTAAAAAAAGCTTTGAATCTATAAAGCAAGCTAATTTGGTT
ATTTATCTTTTAGATGCAACACATCCAAAGAAAGATCTTGAATTAATTAG
TTTTTTTAAGAAAAATAAAAAGGATTTTTTTGTTTTCTATAACAAAAAAG
ATTTAATTACAAATAAGTTTGAAAATAGTATTTCTGCAAAGCAAAAAGAT
ATTAAAGAATTAGTTGATTTATTAACTAAATATATTAACGAGTTTTATAA
AAAAATAGATCAAAAAATCTATCTGATTGAAAATTGACAGCAAATTTTAA
TTGAAAAAATTAAAGAACAATTAGAACAGTTTTTAAAGCAACAAAAAAAA
TATTTATTTTTCGATGTTTTAGTTACCCATCTAAGAGAAGCTCAACAAGA
TATTCTTAAACTACTAGGTAAGGATGTAGGTTTTGATTTAGTTAATGAAA
TTTTTAATAATTTTTGTTTAGGAAAATAA
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1329
View in model
Transcription unit TU_003 View in model
Empirical formula (pH 7.5) H14178C12848N5319O9204P1329
Molecular weight (pH 7.5; Da) 431527.77 View in model
 
Functional genomics
Is essential
Yes (Show evidence)
View in model
Relative expression
0.851454 (dimensionless) (Show evidence)
View in model
Half life
4.1 (min) (Show evidence)
View in model
Extinction coefficient 
(260 nm, 25C, pH 7.0)
14092000
pI 3.92
 
Comments
References
  1. Bernstein JA, Khodursky AB, Lin PH, Lin-Chao S, Cohen SN. Global analysis of mRNA decay and abundance in Escherichia coli at single-gene resolution using two-color fluorescent DNA microarrays. Proc Natl Acad Sci U S A 99, 9697-702 (2002). WholeCell: PUB_0602, PubMed: 12119387

  2. Glass JI, Assad-Garcia N, Alperovich N, Yooseph S, Lewis MR, Maruf M, Hutchison CA 3rd, Smith HO, Venter JC. Essential genes of a minimal bacterium. Proc Natl Acad Sci U S A 103, 425-30 (2006). WholeCell: PUB_0193, PubMed: 16407165

  3. Weiner J 3rd, Zimmerman CU, Göhlmann HW, Herrmann R. Transcription profiles of the bacterium Mycoplasma pneumoniae grown at different temperatures. Nucleic Acids Res 31, 6306-20 (2003). WholeCell: PUB_0569, PubMed: 14576319

 
Metadata
Created 2012-10-01 15:07:10
Last updated 2012-10-01 15:12:38