MG_003 – DNA gyrase, B subunit

Name
WID MG_003 View in model
Name DNA gyrase, B subunit View in model
Symbol gyrB
Protein product MG_003_MONOMER
Cross references GenBank: AAC71219.1, BioCyc: MG_003, CMR: MG_003, SwissProt: P47249
Homologs
 
Classification
Type mRNA View in model
 
Structure
Structure 3457298 MG_001 MG_002 MG_003 MG_004 View in model
Sequence Chromosome: Mgenitalium_Chr_1, Coordinate: 2845 (nt), Length: 1953 (nt), Direction: Forward, G/C content: 35.2%, Sequence:
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51
101
151
201
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401
451
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1851
1901
1951
ATGGAAGAAAATAACAAAGCAAATATCTATGACTCTAGTAGCATTAAGGT
CCTTGAAGGACTTGAGGCTGTTAGAAAACGCCCTGGAATGTACATTGGTT
CTACTGGCGAAGAAGGTTTGCATCACATGATCTGAGAGATAGTAGACAAC
TCAATTGATGAAGCAATGGGAGGTTTTGCCAGTTTTGTTAAGCTTACCCT
TGAAGATAATTTTGTTACCCGTGTAGAGGATGATGGAAGAGGGATACCTG
TTGATATCCATCCTAAGACTAATCGTTCTACAGTTGAAACAGTTTTTACA
GTTCTACACGCTGGCGGTAAATTTGATAACGATAGCTATAAAGTGTCAGG
TGGTTTACACGGTGTTGGTGCATCAGTTGTTAATGCGCTTAGTTCTTCTT
TTAAAGTTTGAGTTTTTCGTCAAAATAAAAAGTATTTTCTCAGCTTTAGC
GATGGAGGAAAGGTAATTGGAGATTTGGTCCAAGAAGGTAACTCTGAAAA
AGAGCATGGAACAATTGTTGAGTTTGTTCCTGATTTCTCTGTAATGGAAA
AGAGTGATTACAAACAAACTGTAATTGTAAGCAGACTCCAGCAATTAGCT
TTTTTAAACAAGGGAATAAGAATTGACTTTGTTGATAATCGTAAACAAAA
CCCACAGTCTTTTTCTTGAAAATATGATGGGGGATTGGTTGAATATATCC
ACCACCTAAACAACGAAAAAGAACCACTTTTTAATGAAGTTATTGCTGAT
GAAAAAACTGAAACTGTAAAAGCTGTTAATCGTGATGAAAACTACACAGT
AAAGGTTGAAGTTGCTTTTCAATATAACAAAACATACAACCAATCAATTT
TCAGTTTTTGTAACAACATTAATACTACAGAAGGTGGAACCCATGTGGAA
GGTTTTCGTAATGCACTTGTTAAGATCATTAATCGCTTTGCTGTTGAAAA
TAAATTCCTAAAAGATAGTGATGAAAAGATTAACCGTGATGATGTTTGTG
AAGGATTAACTGCTATTATTTCCATTAAACACCCAAACCCACAATATGAA
GGACAAACTAAAAAGAAGTTAGGTAATACTGAGGTAAGACCTTTAGTTAA
TAGTGTTGTTAGTGAAATCTTTGAACGCTTCATGTTAGAAAACCCACAAG
AAGCAAACGCTATCATCAGAAAAACACTTTTAGCTCAAGAAGCGAGAAGA
AGAAGTCAAGAGGCTAGGGAGTTAACTCGTCGTAAATCACCTTTTGATAG
TGGTTCATTACCAGGTAAATTAGCTGATTGTACAACCAGAGATCCTTCGA
TTAGTGAACTTTACATTGTTGAGGGTGATAGTGCTGGTGGCACTGCTAAA
ACAGGAAGAGATCGTTATTTTCAAGCTATCTTACCCTTAAGAGGAAAGAT
TTTAAACGTTGAAAAATCTAACTTTGAACAAATCTTTAATAATGCAGAAA
TTTCTGCATTAGTGATGGCAATAGGCTGTGGGATTAAACCTGATTTTGAA
CTTGAAAAACTTAGATATAGCAAGATTGTGATCATGACAGATGCTGATGT
TGATGGTGCACACATAAGAACACTTCTCTTAACTTTCTTTTTTCGCTTTA
TGTATCCTTTGGTTGAACAAGGCAATATTTTTATTGCTCAACCCCCACTT
TATAAAGTGTCATATTCCCATAAGGATTTATACATGCACACTGATGTTCA
ACTTGAACAGTGAAAAAGTCAAAACCCTAACGTAAAGTTTGGGTTACAAA
GATATAAAGGACTTGGAGAAATGGATGCATTGCAGCTGTGAGAAACAACA
ATGGATCCTAAGGTTAGAACATTGTTAAAAGTTACTGTTGAAGATGCTTC
TATTGCTGATAAAGCTTTTTCACTGTTGATGGGTGATGAAGTTCCCCCAA
GAAGAGAATTTATTGAAAAAAATGCTCGTAGTGTTAAAAACATTGATATT
TAA
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1750
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1950
1953
View in model
Transcription unit TU_002 View in model
Empirical formula (pH 7.5) H20889C18935N7980O13597P1953
Molecular weight (pH 7.5; Da) 638285.77 View in model
 
Functional genomics
Is essential
Yes (Show evidence)
View in model
Relative expression
1.96428 (dimensionless) (Show evidence)
View in model
Half life
2.5 (min) (Show evidence)
View in model
Extinction coefficient 
(260 nm, 25C, pH 7.0)
20167200
pI 3.94
 
Comments
References
  1. Bernstein JA, Khodursky AB, Lin PH, Lin-Chao S, Cohen SN. Global analysis of mRNA decay and abundance in Escherichia coli at single-gene resolution using two-color fluorescent DNA microarrays. Proc Natl Acad Sci U S A 99, 9697-702 (2002). WholeCell: PUB_0602, PubMed: 12119387

  2. Glass JI, Assad-Garcia N, Alperovich N, Yooseph S, Lewis MR, Maruf M, Hutchison CA 3rd, Smith HO, Venter JC. Essential genes of a minimal bacterium. Proc Natl Acad Sci U S A 103, 425-30 (2006). WholeCell: PUB_0193, PubMed: 16407165

  3. Weiner J 3rd, Zimmerman CU, Göhlmann HW, Herrmann R. Transcription profiles of the bacterium Mycoplasma pneumoniae grown at different temperatures. Nucleic Acids Res 31, 6306-20 (2003). WholeCell: PUB_0569, PubMed: 14576319

 
Metadata
Created 2012-10-01 15:07:09
Last updated 2012-10-01 15:12:38