DCDP – dCDP

Name
WID DCDP View in model
Name dCDP View in model
Traditional name ({[5-(4-amino-2-oxopyrimidin-1-yl)-3-hydroxyoxolan-2-yl]methyl phosphonato}oxy)phosphonate
IUPAC name ({[5-(4-amino-2-oxo-1,2-dihydropyrimidin-1-yl)-3-hydroxyoxolan-2-yl]methyl phosphonato}oxy)phosphonate
Cross references PubChem: 3972, ThreeDMET: B01317, KEGG: C00705, BioCyc: DCDP, BiGG: dcdp, PDBCCD: YYY
 
Classification
Type deoxyribonucleotide_diphosphate View in model
 
Structure
Empirical formula (pH 7.5) H12C9N3O10P2
SMILES (pH 7.5) C2(N(C1(CC(C(O1)COP(OP(=O)([O-])[O-])([O-])=O)O))C(N=C(C=2)N)=O)
Charge (pH 7.5) -3
Is hydrophobic False View in model
Molecular weight (Da) 384.15 View in model
van der Waals volume 
(pH 7.5; Å3 molecule‑1)
275.11
ΔfG'o (pH 7.5, 25C, I = 0; kJ mol‑1) -1530.30
pI 1.45
logP -2.99
logD (pH 7.5) -7.40
 
Function
Reaction participant View in model
 
Metadata
Created 2012-10-01 15:06:53
Last updated 2012-10-01 15:12:01